RNA id: TU170273


Basic Information

Item Value
RNA id TU170273
length 496
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G126563
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23946144 ~ 23947968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttctattCCTTACCTGCTAGCGTGCAGGTGTGTCTGAAAGCCCGTACGTAAGAGTCCGACAGCTCGGTGAGCAGTGAGATGAGGGTGTTCATCAGATAACTGTCAAATATGACACTGTGCTGACACTGAGCCACCAGCACAGACACAAAGTCGCAGAACTCAGAGTGGAACCAGCGTCCGTACGGTCCAGACTGTATCAGAGGATACTCCACACTATCCTACagtgaagaggagggaggagaagaaaggGGGAGAACACACTTTGAGGGTGCAGCAATTACTTGGAGGTTAGAGAAGAAAGTCACTTACAGGTTCAAATATTTGGCATCTTTACTTTCCTGATGTGAAGGAGTATGTTTGGATGGGTGAGGGATCACTCTGGAGCTTAAACCAATTGGATATCAGTTTGTGTCCATGGGCCACGTGACGGTGAGGATCCACGGAAAGGCCAGAAACTTCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170218 lncRNA upstream 232167 23713488 ~ 23713977 (+) True G126520
TU170217 lncRNA upstream 235026 23710403 ~ 23711118 (+) True G126519
TU170214 lncRNA upstream 240442 23704943 ~ 23705702 (+) True G126516
TU170213 lncRNA upstream 241502 23704385 ~ 23704642 (+) True G126515
TU170149 lncRNA upstream 545758 23399891 ~ 23400386 (+) True G126463
TU170295 lncRNA downstream 57105 24005073 ~ 24005642 (+) True G126581
TU170296 lncRNA downstream 82077 24030045 ~ 24032775 (+) False G126582
TU170297 lncRNA downstream 82077 24030045 ~ 24034174 (+) True G126582
TU170299 lncRNA downstream 82077 24030045 ~ 24034174 (+) False G126582
XR_005641090.1 lncRNA downstream 86908 24034876 ~ 24039495 (+) True LOC120570646
XM_039818309.1 mRNA upstream 16735 23905136 ~ 23929409 (+) True ppp2r3b
XM_039818834.1 mRNA upstream 242217 23695387 ~ 23703927 (+) True asmtl
XM_039818835.1 mRNA upstream 242714 23695387 ~ 23703430 (+) False asmtl
XM_039818656.1 mRNA upstream 250950 23690836 ~ 23695194 (+) True p2ry8
XM_039818654.1 mRNA upstream 256267 23679658 ~ 23689877 (+) True upf3a
XM_039818314.1 mRNA downstream 31769 23979737 ~ 24028770 (+) True usp9
XM_039817746.1 mRNA downstream 119302 24067270 ~ 24089428 (+) True itga4
XM_039817748.1 mRNA downstream 119302 24067270 ~ 24089428 (+) False itga4
XM_039817747.1 mRNA downstream 119302 24067270 ~ 24089428 (+) False itga4
XM_039817456.1 mRNA downstream 190159 24138127 ~ 24152773 (+) True LOC120569576
TU169945 other upstream 1131042 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 2257342 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2318692 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 3080702 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 3087234 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 919353 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1682139 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1691838 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 2169020 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 2463543 26411511 ~ 26417667 (+) False mphosph8

Expression Profile