RNA id: XM_039818835.1


Basic Information

Item Value
RNA id XM_039818835.1
length 2109
RNA type mRNA
GC content 0.50
exon number 15
gene id asmtl
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23695387 ~ 23703927 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGCTCACGTTATGAAACGTCATCACGTATGCGCCGTCACGTTCGTAGCAAGAAGCTAGCTATATTACTAACTGTCTATGGCTATATCATTTCAGTTTCCTAACTGGAGTAGCTAGTTAGAGAAGGCCACCATGGTGCTGAACCCTGTCATTTCCAAGCTCGCCGGTAAACTGGTTGTGCTGGCAAGTGCTTCTCCAAGGAGACTGGAGATTCTCAGCAATGCGGGCTTACGGTTTGAGGTGGTACCATCCTGGTTCAAAGAAACTCTTGACAAGGGACTTTTCAAAGCACCTCACGAGTATGCTGTTGAGACAGCCAAACAAAAGGCCCTGGAGGTGGCCAGGAGGATGCCCTTTAAACACCTGAAGACTCCAGACATAGTAATCGGAGCTGACACTATTGTGACTGTAGATGGCATGATCCTGGAGAAGCCAGTGGACAAAGAGGATGCTTACAGGATGCTGTCAAGCTTGAGTGGTAAAGAGCACAGTGTCTTCACTGGTGTAGCTATTGTCGTCTGCCATGAGAAAGAAAACGAAGAAGTGGATTACCAGTTGATTGAGTTCTATGAAGAAACAAAAGTGAAGTTTGCTGATCTCTCAGATAATATGCTGTGGGAGTACATCAATAGTGGTGAACCCATGGACAAGGCTGGAGGCTATGGTATTCAGGCTCTCGGTGGGATGCTGGTGGAGTACGTCCATGGTGACTTCCTCAATGTTGTGGGTTTCCCCCTGAACCACTTCTGCAAACAGCTGGACCTTATTTACAACCGCTGTACTTCCTCCGCAGACCAAGAAATTGTGTCTGTCCGGCTGAGCCACAACGGTTCTCACGCTACCTCGATACTCACTCAGCCCCCACCCGGCCTGCCAGCTCAGTCCAGCCCCAGTCCCAGCTCTAAAGCCAAACCCAACCCCTCATCCAGCCCCACACCGGCCAATTATACACACCATACCCAGAACAGCTCTTCAGCCAATCCTGTCCATAAGGTGAAAAGGAAAAGCAGTGAAGGTGAAGTGGATGAGAGTTCCTGGATGTTGGTCAACAGCCTGTCTAAACATACAGACGATAGAGAGGCTGAGTTCATATATAATACCACATTACCACTGGTGACTAGCAGTGGGCAGGTGATTGAGCTCAGTGTGACCGAGCATGAGGACAGTGAACCGAAAAAAGACGACTTGCAGCGAATCATTGATCTGATGGACGGATTCAAAGCCTCAAAGGCACTGTTTACCGCGTccaagatgtgtgtgtttgaccttCTACAAAGCAGGCCAGGGCTGGATGCAGCACAGGTGGCTCAGGAGATCAAAGCCTCTGTGAAGGGCACTGCATGCCTGCTAGAagcctgtgtgtctctgggaCTGTTGACGAGCAAACAGAGAGCATGCCAGAAGTCAGTGTACGAGAACACAGATCTGTCATCGCATTTTTTGCTGTCAGACGCTCCTTTTTCGCTGCGGGGCTACATCCAGCATTGTAACGACACCGTGTGGCCTCTTTTCTCCCACCTTGAGAGTGCTGTGCGGGAGGGAGCCAACCAGCGCGAAAAGGCTTTTGGGAAGACATCCAAGGATATGTTTCAGGATactttctacaacagtcaagAAGCCAAACTGAGATTCATGAATGCCATGCACAGCATTGCTAAAGTTACAGGACGAGCTGTAGCAACAGCCTTTGACCTCTCCAGTTTTAAAACTGCCTGTGATCTTGGAGgATGCACTGGTGCAATGGCCTACGAGTTTACTAAAGCCCATCCTGGGTTGTCTGTGACAGTTTTTGACTTgcctgcagttgttgagatgagCGAACATTTCCTTCCTCTGCACACAGACAACCGGGTATCATTTGTAGCAGGAGACTTCTTTAAAGATGAGTTGCCCAAAGCAGACTTGTACATCCTGGCAAGAATTCTCCATGACTGGCCTGATGAGAAGGCTGTGGACTCCTGCTGAGTGAGATCTTCTTGGATGAAGACAGAAGGGGCCCGAGTCGCGGGCTGCTCCAGGCCCTCAGCATGAGCGAGGGGAAACAGAGGAGCGCGACAGAGTACGGTCTGCTTTTGAAGAGCCATGGTTTCATAACAGCACATGTCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170149 lncRNA upstream 295001 23399891 ~ 23400386 (+) True G126463
TU170130 lncRNA upstream 342567 23352577 ~ 23352820 (+) True G126447
TU170121 lncRNA upstream 458564 23232867 ~ 23236823 (+) True G126439
TU170077 lncRNA upstream 595597 23093298 ~ 23099790 (+) False dachd
XR_005640941.1 lncRNA upstream 726217 22966626 ~ 22969170 (+) False LOC120569671
TU170213 lncRNA downstream 955 23704385 ~ 23704642 (+) True G126515
TU170214 lncRNA downstream 1513 23704943 ~ 23705702 (+) True G126516
TU170217 lncRNA downstream 6973 23710403 ~ 23711118 (+) True G126519
TU170218 lncRNA downstream 10058 23713488 ~ 23713977 (+) True G126520
TU170273 lncRNA downstream 242714 23946144 ~ 23947968 (+) True G126563
XM_039818656.1 mRNA upstream 193 23690836 ~ 23695194 (+) True p2ry8
XM_039818654.1 mRNA upstream 5510 23679658 ~ 23689877 (+) True upf3a
XM_039818655.1 mRNA upstream 5510 23679658 ~ 23689877 (+) False upf3a
XM_039818725.1 mRNA upstream 18112 23663340 ~ 23677275 (+) True cdc16
XM_039818471.1 mRNA upstream 32196 23657254 ~ 23663191 (+) True cfap97d2
XM_039818309.1 mRNA downstream 201706 23905136 ~ 23929409 (+) True ppp2r3b
XM_039818314.1 mRNA downstream 276307 23979737 ~ 24028770 (+) True usp9
XM_039817746.1 mRNA downstream 363840 24067270 ~ 24089428 (+) True itga4
XM_039817748.1 mRNA downstream 363840 24067270 ~ 24089428 (+) False itga4
XM_039817747.1 mRNA downstream 363840 24067270 ~ 24089428 (+) False itga4
TU169945 other upstream 880285 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 2006585 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2067935 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2829945 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2836477 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1163891 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1926677 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1936376 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 2413558 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 2708081 26411511 ~ 26417667 (+) False mphosph8

Expression Profile