RNA id: XM_039817747.1


Basic Information

Item Value
RNA id XM_039817747.1
length 4804
RNA type mRNA
GC content 0.49
exon number 29
gene id itga4
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24067270 ~ 24089428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagggtcTCCGCGCACTCAGTTCTCAGTTTCAGTCAGATGAAACTTTAGTTTTTAATGCTTCTCTTCAGTTTCTTCCAGTCAGCTTCCCGTTTTGCGTCTGTCACCCAACCTGGAAGCCTCGTGTGCTGCCTCCTCTCCTTTTACGCACAAGACGGTTAACTGACCGAGGAGCAACAGGAGGTTTCCCACGAGCGAGTCACACCGGGAACGAGGAGGATTTAACGCAGACTTTTTGAAACACACTCCGTCAGTCCTCCATCATGCGACCCTCAGCGGGCAGTGTGTCTGCGTGCTGCaacctggtcctggtcctggtcctggtcctggttcAGGTCCTGGATCATCCTGCAGCAGGATACAGTCTGGATCAGGAACACAGTCTGGAGTTCAGTGGCCCCCGCTCTTCCATGTTTGGATACTCAGTCCTGCTGCATCGCCATGGAGCCCACAGCTGgttgGTGGTCGGAGCCCCAGTAGCGAACTCATCCTCCAGTCCATCGGTTAGATCTCCAGGAGCTATTTATCGCTGCAGCATCACTGCTGAGTCTCGCCACTGCCACCCCATGCATGCtgacgtGTTGAACTGTGGGAAGACGTGCGATGCAGAGAGTGATCACCAGTGGCTGGGAGTCAGTCTGTCCAGACAACCTGGAGACAACGGAGGGCACATCCTGgcGTGTGCTCACCGTTGGAAGAACGTCTACTACTCAAAGAAAGAAGGTCAGAACCACAAGCTGCCTAATGGAGTCTGTTATCGCTATGCCAACGACCTAAGAGACGCTCAACCCATCATCCCCTGCtacagagACCACCAGAGGAAGTTCGGTGAGGATTATGGGTCATGTCAGGCCGGTATTTCCAACTTCCTGACAAAGGATCTGATCATCATGGGGGCTCCGGGGACGTCTTATTGGACGGGTTCAGTTCTGGTCTTTAACACATCCAGTGGAGGGATGTCAGTGTACCTGGACGAcgatgctggagccgtcagctTCGGAAGCTACCTGGGTTACGCTGTTGGAGCCGGTCACTTTTTGAGTCCCGGTACTGTGGAGGTCTTGGGTGGAGCTCCACAATACAACCAGAAGGGCAAGGTCTTCATCTTTGTAGTAGACAACAACATGCTGCGGGTTGTCTCTGAAGTGTCGGGAAAAGAGCTGGGATCTTACTTTGGGTCCAGTGTGTGTGCGGTGGATCTGAACGCTGATGGTTTGTCGGATCTCTTGGTGGGTGCTCCCATGGCAACGGGCATCACTAGGGAGGAGGGAAGAGTCCATGTGTACATCAACCAGGGGCAGGCGAAGCTGTTGGAGGCGGGGTTTCAGCTGACTGGCAGCGACGCCTATGCTGCCCGGTTTGGAGAGACCATCGCCAACCTGGGAGACCTGGACGACGATGGTTACCCTGatGTGGCGATTGGTGCCCCACAGGAGGATGACCTAAAAGGAGCTGTCTACATTTACAATGGCAGAAAGGAGGGCATCTCACCAACTCCATCTCAGaggATTACTGGGTCCACCCTGGGTCGTGACCTCAGGATGTTCGGCCAGTCGCTGAGCTCTGGCATTGACATCGATGACAACGGCTACCAGGatGTGGCGGTTGGTGCATTCCTCTCGGACTCGGCTGTGGTTCTCAGGACCCGTCCGGTGATTCAGGTGAAGGCGTCTCTAGCTCTGCCCGAGCAGATTGACCAGCGGGTGGCACTGTGCCGAGAACACAAGACTCCAACTGTCTGCTTAAATGTTACCGTCTGCTTCAGTGTTAGGTCCAGACAGTTCAGAGGAGCTATAGatCTTCAATATaatttgacctctgacctcctccATAAACCATCCTTCCCTCATCGTTTCTATTTCCACGGTAACGGGTCATCCAATAGCACGAGAGGGCGTGTGAGAGCACGACATGGCCAGGTCACTTGTGCAACGCATGTGGCTTACCAAAGGAAAGATGTGAGGGACATTTTTACTCCGGTCAAGTTTGAGGTTTCCTACAGTCACAGAGAAACAAACACCCACAAAGACTCTTCCAAAACCTTTCCTCCATTAAAACCCATTCTGCAGCAGAGCGCAGGACACCAGAACACCATCACCAACCAGACTTGGTTTGCTCGCTCCTGTTGGCTGGTGAACTGTTCGACCAACATGCAGCTGTCAGCTCAACTAGTGCTGCCAGAGCAGCAGCAGTACTTTGCTCTTGGCTCTGGACAGACCATCATGTTAAAAACATCACTACTGAACTCTGGAGATGACGCCTTCCTGCCGCGACTGACGCTGCGTTTCCCCAACAACATCCACTACATTAAAGTACTGCAGAGCCAGGACAACATGgtcagttgtgatgtcacacagGAGGTCAACAGCACAACGGCAGGTGTTGACTGCAGCGTCACCAGCCTCCTCCTCTCAGCCCATGCCCAGTTGAATATCAGCTTTCTATTGGACGTCAACCAGAACAGCACACCTGGTGACATCATCATTCACGTCAACACCAGCAGTGATAACTATGAGACGGAGGAGTATCTCCATGACAACTCCATCagtctcctccttcctctcaaATATGGAGTCAACGTCAACATCCACGGTTTTGTGACTCCCACCTCATTTGTGTTTGGAGATGAAGACAATACTCCAGTTGACTGCTACACTGAAATATTCAACTACACATACAAGGTGTTGAACTCTGGTCCTAGCAGGTCTCTAGATACTGTGGTAGACATCAGCCTACCGAAGATCCTCACACCTTACCGACACCGACTGCTGCAGGTGGTCGACTGGCAGtcGTCCCAGGGTATGTGTTCGATCAGTGACACAACTGTTTCAGTCATCGAGGACTGTGATGTCTCTGAAGCTTCCTTCATCCAAAAgctcgtcttcttcttctcctccacctccacccgAAGAATGtTTTGTGGACGTGGTGATGAGCTGTGTGAGCGGTTGGAGTGTCGTCTCGGTAACCTGGAGGCGGGGAGAGATGCCTTCATCCAACTGGAGATCAGACTGAATCCTGCTGTACTACTGCAAGCTCCgGGTCGTCATGGTGTCATGAAGTTGGAGAGCACAGCAATGATGTCAAATCCCAGAGAAAGTCCTCATACCATCCTCATCTCCGAACAACCTGTAGCACAGGTGGTGGTGGAAGCTCTTTTTACCCAGAAACCCTCAACAACAGTAAAAGTCTTCATCATCGTTGTCAGTTTAGTTTTGGGTCTGATGATCCTGGCTGCTCTCATCTGGTGTCTGTGGAAggCTGGTTTCTTTAAGAGGGAGTTccagaagaaggaggaggaggagttcaAGAGAGATAGCTGGGACTATGTTCCTAAACTTAACAAAAGAGAGAGCACTTCCTAACCACGACTGTCACGGCTGGCCACAACCTCTAAATCACAGGATGGAGTTCACATTGCGACTGTGCAACAGTGTTAATGAGACATGTCTGTCGACGGATAAATGGAGTGCTGTGTATGAAAATATGGCAACCCATTTTGTCCAAAACAGTAGAACAATACTGCTGTTGAATGTCAACGGCCAATGAAATCTGTCCAGACTGAGTCAGACGCTTTCAACACAGACCTGATGTGAGTGTGCTGAATGACAAAATATCTCAAGTGAACGCCTCCTGAACACACCTGAATCTGAGCATGCCTTTTAAACTATTTCCCGAATGTGCCTTCACAAATACAGACTCGTTCAAAGACTTGAAAAAGACTgcagagatggatggatggaggattAATGAAACGGGAAGTGAACCTGAAACAATCAAGTCTGGACCAATTAGAAAGCCTTGGAGCTTCCTGGGATGTTTCATCACCTGTGACAGTTATTGACTCTTTTAAGAGGAAACAAACTAAAGGAAGTGAATTTCTGATTACCTTTGATCTCAGGGGATGGAAACCtggcctctgattggctcataaCTCTCTGGAAAACTTCCCTTTTGTCTGTGTACATCAtctttctacatttttgtttacctGCTGACCAACGCTTTAAGCACTGGtgacacagagcacacacaccgGCTGTGTTGCACACACCGGGTGCTGTCCAGACAGAAGTAGTAGTCAAGTGATGGCTGCTGGGATGTTCTGGTACAGGGCTTTTACGTGTGTTGTAATGGATGCCGAACGCTATCACTGTGTTTTTGCCCTTCAGCCTTTACAAAGTAAATCTGTGAAATGTTTCTGCGTTGAGATCAACTTTGGTGAACCGTGAATAGTTTTTGCCGTTAAgacatacatttaatttattgaGAGCTTCTTAAGATACTCAAAGATGCTGTACGTGGCAAATTAAATCCTCTAAGTAAAAAATAATACGTACGTACAACAGTTCAACAGTTTCACTGGAACTGATCTTGGACCACCTGGTTCAGGTGAGCCCAGGTATTTGGTCGACACTTTGGTTTGTAAAAAGCTTCGATGTCACCCAATTCTTCAATGAACGGCTCCTGGATTCAGACTAAACTATCAGTGTGGAAATGCAGTTAAAGATGCAACTTGTTGATTAACAGAGCCAGCAGAGCCACGGGGTTGAATGATGGAAGACTACttgaagacatttttaaatattcaaaagcACTGTCTTAACGGTCTGTACAGACATTTAAAACAGCTGCTACCCTCCATTCTGTTTATCTATTTAATACAAATGCACATCACACAGAGagatgttttaatattttaatacattagttttgtttttgtttatgtaaaGTTGTTCTGCACTGGAGAGTCTCACTGCTTTTATCAACACTTTTCTATTAAAATGAAGGATTTTCTATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641090.1 lncRNA upstream 27775 24034876 ~ 24039495 (+) True LOC120570646
TU170297 lncRNA upstream 33096 24030045 ~ 24034174 (+) True G126582
TU170299 lncRNA upstream 33096 24030045 ~ 24034174 (+) False G126582
TU170296 lncRNA upstream 34495 24030045 ~ 24032775 (+) False G126582
TU170295 lncRNA upstream 61628 24005073 ~ 24005642 (+) True G126581
TU170360 lncRNA downstream 2642 24092070 ~ 24098838 (+) True G126628
TU170421 lncRNA downstream 91022 24180450 ~ 24182202 (+) True G126675
TU170425 lncRNA downstream 91022 24180450 ~ 24182132 (+) False G126675
TU170423 lncRNA downstream 91552 24180980 ~ 24182202 (+) False G126675
TU170433 lncRNA downstream 109359 24198787 ~ 24199835 (+) False cwc22
XM_039818314.1 mRNA upstream 38500 23979737 ~ 24028770 (+) True usp9
XM_039818309.1 mRNA upstream 137861 23905136 ~ 23929409 (+) True ppp2r3b
XM_039818834.1 mRNA upstream 363343 23695387 ~ 23703927 (+) True asmtl
XM_039818835.1 mRNA upstream 363840 23695387 ~ 23703430 (+) False asmtl
XM_039818656.1 mRNA upstream 372076 23690836 ~ 23695194 (+) True p2ry8
XM_039817456.1 mRNA downstream 48699 24138127 ~ 24152773 (+) True LOC120569576
XM_039817455.1 mRNA downstream 63648 24153076 ~ 24179221 (+) False LOC120569575
XM_039817454.1 mRNA downstream 63659 24153087 ~ 24179221 (+) False LOC120569575
XM_039817453.1 mRNA downstream 64605 24154033 ~ 24179221 (+) True LOC120569575
XM_039817457.1 mRNA downstream 94521 24183949 ~ 24199308 (+) True cwc22
TU169945 other upstream 1252168 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 2378468 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2439818 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 3201828 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 3208360 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 777893 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1540679 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1550378 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 2027560 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 2322083 26411511 ~ 26417667 (+) False mphosph8

Expression Profile