RNA id: TU170425


Basic Information

Item Value
RNA id TU170425
length 1683
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G126675
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24180450 ~ 24182202 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggacatctacaaattacaacaccgaaagagatggaacaaaaatattttttaatttaacttattttttaaagtaagtgctgtagtataactagcaggagacaagtaataattgaggtaagtttggagacattaccttatttaatcattaaattaataaatattttggttgcatctcttttcggtgttgtaatttgtagatgtccctaagcactcttactgcccggtagtaacagcagcagcagagagcagaagccagcaggcaagtgttatttacataaacttctggtgtacttacaaactttacaatccatcgttttatgagtgcataacctatatatactagtgtagacctttggtatcatttcgggcattattagtggggtaatgttaagagacacttcggatccattagcctctgcgctaagctattcagctgataacgctacgctacgctaactctcccaatgttagacccaggtgaaaaaagcttctgggggggtgtttggctcgagatcatggtgcaaaggaccctagggtgaaattactccgaaccatcactttaagtacgTTGTCATGGCGAcagtgatgatgatgttgatgatgatgatgatgatgatggtgtaaTGTCAGGTCATAGGGAGGAGCTTAGCGAGCCGGGTCATGTATGGGTGAGCGGGCAGTGTAGCCCAAACCTTAGctgcgttagcatgttagcttcCCACTGTCCGATGAAAAATCTGTGTGCAATAATACGAACATATATATTGATTACTGAGACTAATGTTAATAGAGTATCAGTAAATCACTGCTAACATTTTAGGTCATTCTGCACCACTTCAGCACAAACTGTCTACCTGCACGTCTGATACTAATTAATCTGCAGTAGAAACTCTTGATTTTCCTCCTCTTTGCACAGAATCCACAGAAGTGATTGATCACTGAACATTGAATTACTaatgaccatttcacgaacattcattttttttcagcattAATGCCTGTGTGTAGTGACTGTGTGGTCCCTCGCAGGTTTCCGGATAAACAGTTAAGGAAAACTGGAAATCTTGGGAGTAGCTGAGGTGACACAAGCACTTGCACCCACCATAGCTGAGTGTGATTGGCTGGGAGACCCGTTAATCAAGCTAAAATACTCCTAAatacctacttttttttttttttttttttttatctttgtggaacaataatttttaaaatgtctagACAGACACATTAGAATTAAAATGATCTACTGAAAGCGGAACTTTTTTTGGAAAACagtttatttactttttgttgttgttgatgttcatTTTTGATGTTTGGGAAATAATTATACATGGTGAAGAGAATCTGAGCTCAAATGTCCACTTGATTCTGAGTCACATCTCACAGTCTTCTCTTCAACACTCTAATTCATTATTAACTGGACCTCTGACCTTTGATTCCCTTCACCatttaattacttttatttgtttaaagtgTTTATCTTTCATGTCACAAACTTTGCTCTGCTGGACCAACACTCACTATGAGCTCTGAGGCTCTAcgtccttttatttttttaactgatcAAGAAAATCCTTCACATTCTTCTAATTTCACTTCACTGTCTGACTGTTGGTTTCTATTAATTTCTGTTGATGTCTGTTAATGAtgatgtttattttgtattgatATCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170360 lncRNA upstream 81612 24092070 ~ 24098838 (+) True G126628
XR_005641090.1 lncRNA upstream 140955 24034876 ~ 24039495 (+) True LOC120570646
TU170297 lncRNA upstream 146276 24030045 ~ 24034174 (+) True G126582
TU170299 lncRNA upstream 146276 24030045 ~ 24034174 (+) False G126582
TU170296 lncRNA upstream 147675 24030045 ~ 24032775 (+) False G126582
TU170433 lncRNA downstream 16655 24198787 ~ 24199835 (+) False cwc22
TU170500 lncRNA downstream 114677 24296809 ~ 24298205 (+) False sestd1
TU170508 lncRNA downstream 190349 24372481 ~ 24394985 (+) False fzd5
TU170503 lncRNA downstream 198227 24380359 ~ 24383546 (+) True G126712
TU170537 lncRNA downstream 273605 24455737 ~ 24456127 (+) True G126744
XM_039817455.1 mRNA upstream 1229 24153076 ~ 24179221 (+) False LOC120569575
XM_039817454.1 mRNA upstream 1229 24153087 ~ 24179221 (+) False LOC120569575
XM_039817453.1 mRNA upstream 1229 24154033 ~ 24179221 (+) True LOC120569575
XM_039817456.1 mRNA upstream 27677 24138127 ~ 24152773 (+) True LOC120569576
XM_039817747.1 mRNA upstream 91022 24067270 ~ 24089428 (+) False itga4
XM_039817457.1 mRNA downstream 1817 24183949 ~ 24199308 (+) True cwc22
XM_039818733.1 mRNA downstream 24527 24206659 ~ 24255994 (+) True znf385b
XM_039818731.1 mRNA downstream 44291 24226423 ~ 24255994 (+) False znf385b
XM_039818732.1 mRNA downstream 44291 24226423 ~ 24255994 (+) False znf385b
XM_039817936.1 mRNA downstream 80055 24262187 ~ 24274142 (+) True LOC120569821
TU169945 other upstream 1365348 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 2491648 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2552998 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 3315008 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 3321540 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 685189 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1447975 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1457674 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 1934856 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 2229379 26411511 ~ 26417667 (+) False mphosph8

Expression Profile