RNA id: TU170537


Basic Information

Item Value
RNA id TU170537
length 391
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G126744
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24455737 ~ 24456127 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcaaggcgtctttgtaggacgagcagctgcttgctatatgtcccattcattacaatggggaaataccgcagcttgctcactttcgcataactaaagtatatttacagtttgaatttcgtcacggcatgaatattacaggttcctcaaggtcttacaaagcttagctaacacttgtccgatttcggatatcaattgaatgtatttttgtgaatgtcagagttaggaggaggctagctagctctcattgatggactccatctcaccgcggctctatctatgagactcgcggacaagaggcgtttatttccccgattgtttgtttaaataactcaacacacatacccattataagatttactggaacctgcgggctgcggtaaaagattgcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170508 lncRNA upstream 60752 24372481 ~ 24394985 (+) False fzd5
TU170503 lncRNA upstream 72191 24380359 ~ 24383546 (+) True G126712
TU170500 lncRNA upstream 157532 24296809 ~ 24298205 (+) False sestd1
TU170433 lncRNA upstream 255902 24198787 ~ 24199835 (+) False cwc22
TU170421 lncRNA upstream 273535 24180450 ~ 24182202 (+) True G126675
TU170605 lncRNA downstream 388849 24844976 ~ 24859362 (+) False G126802
TU170610 lncRNA downstream 388849 24844976 ~ 24859362 (+) False G126802
TU170612 lncRNA downstream 388849 24844976 ~ 24859362 (+) False G126802
TU170613 lncRNA downstream 388849 24844976 ~ 24859362 (+) True G126802
TU170618 lncRNA downstream 388849 24844976 ~ 24859362 (+) False G126802
XM_039818621.1 mRNA upstream 78422 24372471 ~ 24377315 (+) True fzd5
XM_039818162.1 mRNA upstream 109768 24310907 ~ 24345969 (+) True plekhm3
XM_039817939.1 mRNA upstream 157519 24277157 ~ 24298218 (+) True sestd1
XM_039817938.1 mRNA upstream 181595 24262187 ~ 24274142 (+) False LOC120569821
XM_039818466.1 mRNA downstream 222370 24678497 ~ 24706412 (+) True fhip1b
XM_039819153.1 mRNA downstream 411685 24867812 ~ 24880693 (+) True dhrs12
XM_039818272.1 mRNA downstream 454958 24911085 ~ 24935004 (+) True ints6
XM_039817977.1 mRNA downstream 524231 24980358 ~ 24983278 (+) True tsn
XM_039818798.1 mRNA downstream 599189 25055316 ~ 25061613 (+) True eaf2
TU169945 other upstream 1640635 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 2766935 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2828285 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 3590295 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 3596827 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 411194 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1173980 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1183679 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 1660861 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 1955384 26411511 ~ 26417667 (+) False mphosph8

Expression Profile