RNA id: XM_039817938.1


Basic Information

Item Value
RNA id XM_039817938.1
length 2295
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC120569821
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24262187 ~ 24274142 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGGGATAAGTGTGAAGCCTCAGAGAGATCCAGAGAGAAGCTGACAACTGCTGCAACAGGATTATTAACAGTATTTGTATTCAGAGAGAAACAATTTCCACTTATTGTGGTACTTATATGTGGGAGAAttgcatttgttgttgttgtacttgTAGTAACAGAGGGTACTTATTTTCGTGGTATTGCGTATATATTGGTAGCTTTTGAacttgttgtaataatattACTTTGTCATAGAGATATTTCTACATgtagttttaaaagtatttgtAGTTTTAAGATATATCTTTGTGCAATGATTGTTAGTTATTTCAGTAGACATAATAGCACTTAATGAATGAACTGATGAAAAGTATAGACTGCAGGTGTAAAGTAAAAATCTGAGTCGTACAGAATAGAGTATAAGTAGAGTCCAGTAAAATGCAGGACTATGAGGAGTCAGTGTCGTTCCTGGGGACCTGGGGCCCATTTCAGAAGAGAACCTTCTTCCTGCTCTGTCTCACCACCATCCCAAGTGGATACAACCTCCTGGCTGTCATCTTCCTGCTGGCAACGCCCCCGCACCAATGCTACATCCCCGACAATAGCAACCTAAGCCAGGACTGGATCCAGACCAGCATCCCAGTACAGTTTAACCTCGTGTGCAGGGACCAATGGAAACAGCCTCTGACCTCTGTCGTCTACTTCCTGGGAGGACTGTTCGGATGCTTCATCTCTGGGCAGATTTCTGACCGATTTGGCAGGAAGCCTGTACTGTTCGGTGCCATCACTGCGCTGAGCATCTTCAGCAGTGCTGTGGCCTTTGCTCCGTCCTGGCCCGTCTTCACCATGCTCTTCTTTTTGCTGGGCCTGGGTCAGATCACCAGCTACATAGTTGCGTTTGTTCTGGGTTCAGAGATCCTGATTGGTTCGACTAGAGTTCTCTTCTCCAACCTGTGTTTGCCTTGGGTCTACGTGTTCGGTATGATGGTGCTGCCTGTCACTGCTTACCTGGTTAGGAGCTGGAGACACCTGTCACTGACCATGGCTGTGCCAGGCCTGGCCTGTATCCCCCTCTGGTGGCTGATCCCAGAGTCTCCTCGCTGGTTGGTGTCTCGAGGCCGTTTTCAGGAAGCAGAACTCCTGCTGAGGTCAGCGGCTCTGGAGAACCGAGTGGAAGCTCCACATGTCATCTTCCTCTCAGCCAACGTTGAAAAAGCAAAAAGTGAGACGACAGAGTCCCCCAATTTCCTGGACCTGCTGAGGACAGCAAACATTCGACAGATTACATTTATTCTTTGGCTCATGTGGTTTTCTTTGAGTATAAGCTACTTTGGACTGTCATTCAACATGTCTGGTCTCTATGGCAACCCTTTCCTGAACTACTTCCTGGTGACGGCTGTTGAGCTCCCAGCGTACGCTGCCAGTTGGCTGGCGGCACGCAGTCTTCCTCGCCGCCTGTCGTATATCAGCTTCACCCTGCTGGGGGCGCTAGCTCTGCTCCTCATCCAAATCACTTTGTACAGTTATCCAACTCTCACCCTGACCCTGGTGCTGCTCGGTAAATTTGGCCTTCTGGCTGGTGCCGGGGTGTTGTACATGTTCACTGGTGAGCTTTCTCCCACAGTCATCAGGAACACAGCAATGTCCTCTTGTGCCATGTTCTCCAGAGTTGGGTCCTCTGTTTCCCCGTACCTGCTGCAGCTGGCTGTGTTCAATGAGTTCCTGCCGTGGGTCGTTGTAGGTTCTCTGTCTGTGCTCAGTGTTCTGGTCTGCGTCTTCCTGCCAGAGACCTTCAAACAGCCGCTGCCTGACACCATCCAGCAGATGGCGCTAACACATCGGTTCAGGTGGCCATGGGCCTCCATGTCTCTGTCAGAGGATGATGGGAAATCAGTTAAAGACCAGACTACTACACCTGAGATCATCTGCACAACTCACCTATAAGACtcacaaaaaaatgaaagaaaacaaaaacaacggACAACGGACAACACTAAAACTGCCATCGCCAACAAAACAAGGTTATATTTTAGGAATTAAATATAAGACTTGTGAACCCTGGGAGTGAGGCATTCATTGACACCTTATGAATAGTAACAGTTTGTTGTCTTTACATACAGTAGAGACAGAGTGCACTACTGAGATGGAAAAGGACACTATTGCAAAGCTTTGCTGAAAATAAGGAATCACATctattaaagctacattgtgaaagaatttctcccatctctagcggtgaaattgtatatgacaaccaactgaatattactttctagcccttcccattccgagctcctacggtggccgaaccc

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170433 lncRNA upstream 62352 24198787 ~ 24199835 (+) False cwc22
TU170421 lncRNA upstream 79985 24180450 ~ 24182202 (+) True G126675
TU170423 lncRNA upstream 79985 24180980 ~ 24182202 (+) False G126675
TU170425 lncRNA upstream 80055 24180450 ~ 24182132 (+) False G126675
TU170360 lncRNA upstream 163349 24092070 ~ 24098838 (+) True G126628
TU170500 lncRNA downstream 22667 24296809 ~ 24298205 (+) False sestd1
TU170508 lncRNA downstream 98339 24372481 ~ 24394985 (+) False fzd5
TU170503 lncRNA downstream 106217 24380359 ~ 24383546 (+) True G126712
TU170537 lncRNA downstream 181595 24455737 ~ 24456127 (+) True G126744
TU170605 lncRNA downstream 570834 24844976 ~ 24859362 (+) False G126802
XM_039818733.1 mRNA upstream 6193 24206659 ~ 24255994 (+) True znf385b
XM_039818731.1 mRNA upstream 6193 24226423 ~ 24255994 (+) False znf385b
XM_039818732.1 mRNA upstream 6193 24226423 ~ 24255994 (+) False znf385b
XM_039817457.1 mRNA upstream 62879 24183949 ~ 24199308 (+) True cwc22
XM_039817453.1 mRNA upstream 82966 24154033 ~ 24179221 (+) True LOC120569575
XM_039817939.1 mRNA downstream 3015 24277157 ~ 24298218 (+) True sestd1
XM_039818162.1 mRNA downstream 36765 24310907 ~ 24345969 (+) True plekhm3
XM_039818621.1 mRNA downstream 98329 24372471 ~ 24377315 (+) True fzd5
XM_039818466.1 mRNA downstream 404355 24678497 ~ 24706412 (+) True fhip1b
XM_039819153.1 mRNA downstream 593670 24867812 ~ 24880693 (+) True dhrs12
TU169945 other upstream 1447085 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 2573385 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2634735 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 3396745 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 3403277 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 593179 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1355965 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1365664 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 1842846 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 2137369 26411511 ~ 26417667 (+) False mphosph8

Expression Profile