LOC120570646


Basic Information

Item Value
gene id LOC120570646
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24034876 ~ 24039495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641090.1
ACTCTAGGGGGAGGCCTTGCTTTAGTTTTCATAAAATGCAATAAGAGTTGAAGAAGCTGCAGTGGCTCAGTGAGGCTGTACTCGACAGCTAAATGTTAATATCATGGGGCAATCATGGCTGTAGTCTCTTGTTTATTTTCCTGCATAACACAATGCAGGAGACCTATATTAACATTTCTAGAGCAATTAAAAGAAGCTTGGGCTGCATCACTCTGCATGAAAAGAAGTAAAGGTGTTGAGCAACAGATGAATACCCTCCTGAGATCAGAGAGCGTCCTGCTGGAGGAACAACACTGCTGTGCCGTCAGTTGATTCTACACACCTGGTCACACATGACCCACCTCTGATTGGCCTGTTTGGAAACCAGTGGTCCAATCACAGGCTACCACACCATAGAAGGACATGTCAGCTTCAGCAGACAGAGCTCTTCTGTTAGTGTGTTtttccgtgcgttcatggacatcggaaaaaatgtttttccgagtgaaaacgtcaccattcacgtaacttcctgtgggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641090.1 True 520 lncRNA 0.45 3 24034876 24039495

Neighbor

gene id symbol gene type direction distance location
usp9 usp9x,LOC104960511,LOC100693451 coding upstream 6106 23979737 ~ 24028770 (+)
ppp2r3b ppp2r3b,LOC100705877,LOC102783484,LOC107099188,LOC102198241 coding upstream 105467 23905136 ~ 23929409 (+)
asmtl NA coding upstream 330949 23695387 ~ 23703927 (+)
p2ry8 p2ry8,gpr82,LOC103134757 coding upstream 339682 23690836 ~ 23695194 (+)
upf3a upf3a,LOC104960519 coding upstream 344999 23679658 ~ 23689877 (+)
itga4 itga4 coding downstream 27775 24067270 ~ 24089428 (+)
LOC120569576 NA coding downstream 98632 24138127 ~ 24152773 (+)
LOC120569575 ssfa2 coding downstream 113581 24153076 ~ 24179221 (+)
znf385b znf385b,LOC102780200 coding downstream 167164 24206659 ~ 24255994 (+)
LOC120569821 NA coding downstream 222692 24262187 ~ 24274142 (+)
G126582 rpl8,LOC106586796,LOC107673716,LOC106581950 non-coding upstream 702 24030045 ~ 24034174 (+)
G126581 NA non-coding upstream 29234 24005073 ~ 24005642 (+)
G126563 NA non-coding upstream 86908 23946144 ~ 23947968 (+)
G126520 NA non-coding upstream 320899 23713488 ~ 23713977 (+)
G126519 NA non-coding upstream 323758 23710403 ~ 23711118 (+)
G126628 NA non-coding downstream 52575 24092070 ~ 24098838 (+)
G126675 NA non-coding downstream 140955 24180450 ~ 24182202 (+)
G126712 NA non-coding downstream 340864 24380359 ~ 24383546 (+)
G126744 NA non-coding downstream 416242 24455737 ~ 24456127 (+)
G126802 NA non-coding downstream 805481 24844976 ~ 24859362 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other upstream 934793 22978602 ~ 23100083 (+)
G126363 lmo7 other upstream 1219774 22807193 ~ 22815102 (+)
fbxl3a fbxl3 other upstream 1296223 22730923 ~ 22738653 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 2343072 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 2400119 21619348 ~ 21634757 (+)
cwc22 cwc22 other downstream 144454 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 237662 24277157 ~ 24298218 (+)
fzd5 LOC104950716,LOC108238837 other downstream 332976 24372471 ~ 24394985 (+)
cacnb4a cacnb4 other downstream 1590612 25630107 ~ 25664427 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other downstream 2077493 26116988 ~ 26129879 (+)

Expression


Co-expression Network