RNA id: XM_039817456.1


Basic Information

Item Value
RNA id XM_039817456.1
length 640
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120569576
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24138127 ~ 24152773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCGCTGCGGACACGCCCCCTCTGGTTTCAGGAAGCGGAAGCAGGAATGTTGCagtgttttcagaaaagttTGGAGAAGTTTGACAGTTTGGAAGCAGAGACACAAACTGCGGAGAAACATGACGgtGTGTTACCTGCTGCTGATGTTGCTGTAGAGTCGTCAGTCTcctctgactgactgactgactgactggccTCAACCAGACACACAGAAAGGCAGATATGGAGAGTGGATCTCTGGAAATGGACACCAGCACTGCTCCAGATCCAAGTGTGCAGTCAGACCACCGCTTAGCCGGCCTGCGGCGTCGGGCCTGGGCCCAGAGTAGGGACTCCATCTGGCAAGAATCAGAAGCAGAGAGCTGTGACCCCCAGGGGTCCCAACAGAACGTAATGGATGGGGAAGAACAAAGACCCTCAGAAGAACCAGggcGGGTTCCTAACAAGATCACAAGCTGGCTGATTGAATGCAGGACTCCCCTCGGAGCCTCTTTAGATGATCAGAGTGCTTCTCCAAGCAGAGGTAATccacattttctgtgtgtgttgtttgtataccGTACATTACATTGTGAGGACCCCAACCTGATAGGACATGTTCTGGGGATGTTGGTTCATGACTAAATATTTGCAACTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170360 lncRNA upstream 39289 24092070 ~ 24098838 (+) True G126628
XR_005641090.1 lncRNA upstream 98632 24034876 ~ 24039495 (+) True LOC120570646
TU170297 lncRNA upstream 103953 24030045 ~ 24034174 (+) True G126582
TU170299 lncRNA upstream 103953 24030045 ~ 24034174 (+) False G126582
TU170296 lncRNA upstream 105352 24030045 ~ 24032775 (+) False G126582
TU170421 lncRNA downstream 27677 24180450 ~ 24182202 (+) True G126675
TU170425 lncRNA downstream 27677 24180450 ~ 24182132 (+) False G126675
TU170423 lncRNA downstream 28207 24180980 ~ 24182202 (+) False G126675
TU170433 lncRNA downstream 46014 24198787 ~ 24199835 (+) False cwc22
TU170500 lncRNA downstream 144036 24296809 ~ 24298205 (+) False sestd1
XM_039817746.1 mRNA upstream 48699 24067270 ~ 24089428 (+) True itga4
XM_039817748.1 mRNA upstream 48699 24067270 ~ 24089428 (+) False itga4
XM_039817747.1 mRNA upstream 48699 24067270 ~ 24089428 (+) False itga4
XM_039818314.1 mRNA upstream 109357 23979737 ~ 24028770 (+) True usp9
XM_039818309.1 mRNA upstream 208718 23905136 ~ 23929409 (+) True ppp2r3b
XM_039817455.1 mRNA downstream 303 24153076 ~ 24179221 (+) False LOC120569575
XM_039817454.1 mRNA downstream 314 24153087 ~ 24179221 (+) False LOC120569575
XM_039817453.1 mRNA downstream 1260 24154033 ~ 24179221 (+) True LOC120569575
XM_039817457.1 mRNA downstream 31176 24183949 ~ 24199308 (+) True cwc22
XM_039818733.1 mRNA downstream 53886 24206659 ~ 24255994 (+) True znf385b
TU169945 other upstream 1323025 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 2449325 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2510675 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 3272685 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 3279217 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 714548 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1477334 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1487033 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 1964215 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 2258738 26411511 ~ 26417667 (+) False mphosph8

Expression Profile