RNA id: TU170299


Basic Information

Item Value
RNA id TU170299
length 2648
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G126582
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24030045 ~ 24034174 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCAGTTTCATGTTACAATTGTAAATCTTGTATTTGTCCAGCTGTAAACAGAAAATGGCCACTTTGTTTTAGCAGTACACAAGATTAAGAGTTTCATTGCAACCATTTAGACTTGTCAGAGTAGAAAAAGCACATTCGTGTTACTAATACCATTTACAATAGCTCGGTACTCTTCAAGTGTCCAGGTAAGCCGTGACAACGATTGGACCAGCTAAACAGACTTCAGCAATCATTACTTGCatcatttacacctgtgcttttcctactgtgacatgccAAATAAGTCTTCTGTGGAAAGGGGCAAATTGTTGATCATTCTACCTCTCAATTCTAAACATCTGTCACACATTTGAtctttatgcatgtgtgtggacCCAGAAATGAATCAAAAGAAGTCTTTtggaacacatttttattatcAAGAAAGTCAGATTTAGTTCTCCTTCTCTTGCACGGTCTTTGTTCCACGCAGTCTGCCTGTACGACGGGCAGCGATAAGACCGACCTTGCGACCAGCGGGCGCATCCCTCCTGATCGTTGAGGGTTTGCCAATATGCTGATGGTTACCACCACCGAAGGGATGCTCAACGGGCTgcacagagaaaacaaaaagaggTTATCAGTCTGAGGGAAACCTTCATTTGTTATTGTAGTTGCAAAACCCAAAATGTACTGAATACTTTGCCTCATTTCCAGAGTGCAGAGACTGGCACAGACACAAGCTATACAGAAAAGGTCTTATAATACTGTTGGCAGAATAGCATAGTAATCTATCTTAGCTCCAGAAACACAGCACCAAACAAGCTTCTTTTTACTGAGCCGTAGGggatacgtacattttcacattAAGGGCAAATTTGGACTTCATTAATGTTAGGGattctgtgtttttaaatgtagacCCTCACACCATCCATTTAGGAAATCTTAAGTTGTCCGTCCCTCAAAAATGCTTCTACATTCAAGACCAAATCCTCATATCAGCGCCACCTTACCGGACAGTCACtaccaaaacattttaaaaagacaaaatgtcTAACCCAGCAGCCGAACCACTTCTCACATCTAAAACAGGTGCTCAAAAAGTGCTCCATTTAATGCAATACGTGCAAGGTCTCAAAACCTCTAGTAACTTTTGAGAGATATAAAACACAAGTTTGGAAAACTAAGCTAATGAGAACTTGTGGGGAGCAAGGCAGAAATGACAAGACGTTAAGAGTGTGACAACCTCTAACTCTGTATAGAACAGAAAACCACCTCTTTCTCCACCTTAAGGCTTCTCCTTAATcagtatattaaaaaaatactctTCCCCTACGCTTCAGTAGACAGTCAATTATTTATGTCCCGCATTATCTAGCCTTTCTCCAGAATGTACAAAACACGTCCTTCAAATATGTCAACATCTCATCTCGCACTGTTCCTCGTCCTGCATTGACTTCATAGAGAACGTCGTTGCAGTATGTTGGAGTTGACTTACGTTCATAGCCACACCACGGACACGTGGCCAGCAGTTCCTCTTGGCCTTGTACTTGTGGTAGGCACGACCAGCCTTCAGGATGGGCTTGTCAATACGACCACCTCCAGCAACCAcaCGACAACAGCTCTGTTGGCAGAGGCGATAACTTTCTTGGAGCCTGAGGGGAGCTTGACGCGGGACTTCTTGGTCTCAGGGTTGTGGGAGATGACGGTGGCGTAGTTTCCTGACGCGCGGGCCAGCTTGCCTCTGTCACCGGGCTTCTCTTCCACGCAGCAGATGATGGTTCCCTCGGGCATTGTGCCAACGGGCAGGACATTGCCGATGTTCAGCTGAGCCCTTCTTGCCGCAGTAGATGAACTGTCCAGTATGGATGCCCTCAGCAGCGATGAAGAGCTCAGTCCTCTTCTTGAAGCGGTATGGGTCACGGAAGGCCACTTTGGCCAGGGGAGCACCACGGCCGGGATCATGGATAATATCCTGAGAGGGTAGACCACCACAAGAAAACAATGTCATTGATTGTTCACCAACAACCGGTGTGGGGACTTCAATCTGCTCCTACGACAGTGCCAGAGTCCTCACTTACCTTCACAATCCCCTTGATGTAACCATGGCGTTCAGCGAAGTCAATGTGACGGAGTTTAGCGGCACCTTTTCTGTGCTTGACGTGGGCTTTGAACACGGAGCCCGCACCTTTTCTCTGTCCCCTGATTACACGTCCCATCGTGTACtgaaacagagacacatacGGCGTTATTTACCAGCTTGACATGTGAGTGCTAACTTTTGAGGCCTGTAGCAGTTGCTAATGCTGTCAGCTAATTAGGGACTATTAAACACATTCACCCTTCTTACGTGAATGTAATTTAAGCAGGCATTTGGTATATAGATTACAGTATCTATAGCTTCTCCAAACGGCTCGCATAAGAGACAAAACACAGATCCGTTCTGTAGCGTTTGCCGGCCTTTTAGCCGTCACCGCTACTTACTGCACCATGTCACCACTCAGCCACAGAACCACAACAAAACGCTTCAAAACAAATGTCTGCCTTTAAAATACTCAGTAGGACACATTCTTATACATCTCATGCGCATTtagaaatgtttgtttaaagtggATGAACTAAGAAAAACATGATTTAGAACAGATTTTACAAGGGGAATCAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170295 lncRNA upstream 24403 24005073 ~ 24005642 (+) True G126581
TU170273 lncRNA upstream 82077 23946144 ~ 23947968 (+) True G126563
TU170218 lncRNA upstream 316068 23713488 ~ 23713977 (+) True G126520
TU170217 lncRNA upstream 318927 23710403 ~ 23711118 (+) True G126519
TU170214 lncRNA upstream 324343 23704943 ~ 23705702 (+) True G126516
XR_005641090.1 lncRNA downstream 702 24034876 ~ 24039495 (+) True LOC120570646
TU170360 lncRNA downstream 57896 24092070 ~ 24098838 (+) True G126628
TU170421 lncRNA downstream 146276 24180450 ~ 24182202 (+) True G126675
TU170425 lncRNA downstream 146276 24180450 ~ 24182132 (+) False G126675
TU170423 lncRNA downstream 146806 24180980 ~ 24182202 (+) False G126675
XM_039818314.1 mRNA upstream 1275 23979737 ~ 24028770 (+) True usp9
XM_039818309.1 mRNA upstream 100636 23905136 ~ 23929409 (+) True ppp2r3b
XM_039818834.1 mRNA upstream 326118 23695387 ~ 23703927 (+) True asmtl
XM_039818835.1 mRNA upstream 326615 23695387 ~ 23703430 (+) False asmtl
XM_039818656.1 mRNA upstream 334851 23690836 ~ 23695194 (+) True p2ry8
XM_039817746.1 mRNA downstream 33096 24067270 ~ 24089428 (+) True itga4
XM_039817748.1 mRNA downstream 33096 24067270 ~ 24089428 (+) False itga4
XM_039817747.1 mRNA downstream 33096 24067270 ~ 24089428 (+) False itga4
XM_039817456.1 mRNA downstream 103953 24138127 ~ 24152773 (+) True LOC120569576
XM_039817455.1 mRNA downstream 118902 24153076 ~ 24179221 (+) False LOC120569575
TU169945 other upstream 1214943 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 2341243 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2402593 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 3164603 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 3171135 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 833147 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1595933 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1605632 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 2082814 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 2377337 26411511 ~ 26417667 (+) False mphosph8

Expression Profile