tnfsf11 (LOC104934832)


Basic Information

Item Value
gene id tnfsf11
gene name LOC104934832
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 30374201 ~ 30387537 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819093.1
TAAAGGGCCCGCTTTACCTGTCGTGCGCTCAGGTCGATGTGGATCTGCTCGCCAGTCTTGTTTCAGTCTTTCCCGTCGCTCTATCTAATATTGAGTAAACCGGAGGatccctctgattggctgcagagaAAGCGAGCTCTTTCCAGCCCACCCACCGCTGATTATAGGGACTCTTGCAGACTCTCTTCCCTTCCTTGCATTGAGTCTGGGACCTGGCCACTGGGGCTGCACGGCACACACAGAGCGCGCATCATGGCAGCTACCCACAGCGACTACAGAGGCTACCTGCGGAACACCGTCGACATCGAGGCAGGGCAGCACCGCTTCCACCCGGTGCAGAGCTCGGAGCCCACTTACCGGCCGCTCCTATTCGGGACCCTCGCTGTTATGGGATTGCTTCAGGTTGCTTCCAGCGTGGCGATCTTATTACACCTGACAGGTTATCTGCAAGAGGTAGATTTGTCCACGGCCCCGCATCGGCCCATAGAGGAAGTACAGACGGAGCCGGTGCTGAACGCGCTGAGAGACCCGAGGAAAAAAGGACGGTGCAAAACTCCAAAAGAGAGCCTGGCATCAGCTCATCTACCAGTCAAAGTGCCCCAGGAGTACTCGAAGAAGGGTGAGCAGAAGGCCATCACCATTGACTGGAACGAGATGCATGGACACTGCCACAAAATGGGCTACCAGAAGGGGAAACTGCAGGTGATCGAGTCGGGTTTCTACTATATCTACGCCAAGACCTGCTTCCGCTACTACGTGCTTTTAGACGAGAGCAGCAGCCAGGCCGGGGTCACGCCGGTGGATGTTAGCAACACCCAGCTCATCCAGTACGTCTACCGCGAGATCATCAAACAGAACAGCAAGTCGGTGCTGCTGATGAAGACGGGCAGCACCATGCGCTGGAACAACACCAGCTATAACATGTACTGCGCCCAGCAGGGCCTAGGCGTCCGGCTGGAGGAGGGAGACGCCTTGTATGTCAATGTGTCCAATGCTTGGATGCTGGACCTGGAGGGAGAAGGGACGTATTTTGGGGCCATAAAGTTGGGTAACTGAGAAATTAAAACACGTGGGGAGCGGACATGCTACTGAACATTTCATATGCCAAAGAACCACTGTTATTGATTTTTATAATGTtaatatgttctttttttttttttttgggttcatgtgttgttgttttttttttttttttacgttgcTCTTCACCTAATAGTACGGAAgtggattagggccacatgtgaaaaatgtatttgagttctgagtttaaagtcagaattctgagatctgattttaatctcagaattctttctacatttttcacatgtggccctaatccacTTCCGTAGAATGGCCTTGGAATCCTTGATGAGAACACATAATGGAGAAGGTTGTcacctttttaaaaaccttGTTTTGCCCCGCACCCCAAACAAAATTGAGACACACAGCTCTCGACTTCATTCAAAATAGCActggagtctttttttttttttttcccccaagtgTTGGGCTTGTTATTGTGAATTTTCAATCCATTTCCGTTCGGATAAGAACATTTAGACTTAAGCACAGACATGTGTTTATGCACTAATTAAACAAACCATGAGGGAGCAACTTAGGAAGTAAGTTTGTTGGCAAGAGTGTGCAGCGAGAAAGGATTTATTAATTTTGGAACATTGTAGCTGACGGAGCATCTGCTTGTACTTAGCAGATTATCACAGAATAAAAATAACACAACTCCCAGGTGTGCCTCCGAGCCACAGCAGTGAATGCACAAATGTTTTCCTGGAAGGTTTTGTAAGTGTGAACAAGGCAGGCAATGAGGCGTTCTGGCAGTAAGTAGCTCAACGGTATAATCTGAAATAGGCAGTTAGATGGGCATTTAAATCGCCGTCCAAATCTCTTAGGCATCATTTTAAAACTTCATCCTATGAAAGATACGCTTTGACTCGGACACAAgacacacagtttaaaaaaaaaaaaaaaggtcatgaTGTGTAAACCGGGTAaccccagcccgatctgccgccgatttgatttcgccctgcagctcaggctggaaacctgtacgttttatctatcctgcttccgttacaaatctgcaggggccaatcacaaactggcttatccacctggcgcgctatcgGCGGGTTTTAACGCGATGCCGATAGAGCGGcgacagctttttgtttacgttcaacatggcggccaccgaagcgcagcaacccgttgatgccactGTCGCTGCTGTCGCTGCTGTCTGCAAAGTACATCacctggatcgttggtctgattggttgaaggactgtccaattgcgtacagagtcatttgaactacgcCTGTTGATCACatctcttgtgcagtagaaaatacataGCAGACtcccccagactaatgttcaatcttaaaagattgagcttggtctgctgATAGCCAGACTACATGATGTGTGCTCCAAAAACTCATTTGTTATCCAGTTTTCTGTCTTAATGAAATGTAAGGGGTGGCCTTGCTTCACTGATGGCAATCCCAGGACAACGTCACTTCAAACTAAGGAGCAAATGACATCTGTTTGTCATGTTTATGACAATCAACAAGCGATGCAGATAGCTGGACTGTCTGACCATGAATGACACGAATAGACTCCTGTCTTCTTTAACCAGAGGGAACCAAATTGACTTTGGTTCATCTTTAActtaaattttgtttttcatttggcTCTTCAGTGAGGCAAATGGGAATATGcactaaatatttatttattagctaTAGAAGTACAGAGACAGGTCATTGTTAAAGTGACCttttggctgtaaaaaaaaaaaaaaaatcatttatatttgatgtCTGTATGACATTCATTATACAGCGCTTAGAGGAAATAGTAGACACGCTTTTTGTTATTCAAACACAGGGGCTTCATTTTAAAATTCCATATTTATGTATCTTGATTTTGACAATTCTGTGTGCACTTGCCTAGCCAAAAGCAATATGGATATATTGTTTATTCTACAAGATTGTAGCATACCTGTAAGATCTTCAtctgatagatttttttttctattcatttttttattttttatttatgttttgtgtatgtttttaataataaaaaaaaaagtacttttgTAA

Function

NR:

description
tumor necrosis factor ligand superfamily member 11-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819093.1 True 3136 mRNA 0.44 4 30374201 30387537

Neighbor

gene id symbol gene type direction distance location
dbr1 LOC107551939,LOC101160048 coding downstream 303619 30059167 ~ 30070582 (-)
lcmt2 lcmt2 coding downstream 328446 30028665 ~ 30045755 (-)
dnajb11 dnajb11 coding downstream 368263 29995027 ~ 30005938 (-)
satb2 satb2,LOC103367524 coding downstream 409881 29900255 ~ 29964320 (-)
rftn2 rftn2 coding downstream 696035 29643664 ~ 29678166 (-)
akap11 akap11 coding upstream 38103 30425640 ~ 30452231 (-)
dgkh dgkh,LOC102792327 coding upstream 70531 30458068 ~ 30543839 (-)
rgcc rgcc,LOC103363473,LOC104939188 coding upstream 323164 30710701 ~ 30719451 (-)
f5 NA coding upstream 339402 30726939 ~ 30752392 (-)
ccdc80 LOC103363469 coding upstream 388782 30776319 ~ 30799641 (-)
G128147 NA non-coding downstream 42668 30329672 ~ 30331533 (-)
G128145 NA non-coding downstream 67848 30304114 ~ 30306353 (-)
G128139 NA non-coding downstream 71271 30268936 ~ 30302930 (-)
G128134 NA non-coding downstream 273840 30099697 ~ 30100361 (-)
G128103 NA non-coding downstream 323348 30049492 ~ 30050853 (-)
G128181 NA non-coding upstream 3129 30390666 ~ 30390918 (-)
G128184 NA non-coding upstream 22385 30409922 ~ 30412988 (-)
G128180 NA non-coding upstream 74721 30462258 ~ 30473261 (-)
G128241 NA non-coding upstream 346519 30734056 ~ 30773029 (-)
G128248 NA non-coding upstream 386237 30773774 ~ 30774860 (-)
kcnh3 LOC102215587,LOC101479217,LOC102787819,LOC100702937,LOC102305604 other downstream 94671 30100506 ~ 30279530 (-)
G128026 LOC103372056,LOC102784025 other downstream 590996 29781954 ~ 29783205 (-)
G128025 plcl1 other downstream 596768 29777040 ~ 29777433 (-)
G127923 LOC103391627,LOC101464856 other downstream 981058 29387976 ~ 29393143 (-)
G127924 LOC103391627,LOC101464856 other downstream 985629 29388070 ~ 29388572 (-)
G128435 NA other upstream 1101485 31489022 ~ 31491705 (-)
LOC120569384 rps24,LOC102780737 other upstream 1495192 31882729 ~ 31936558 (-)
rubcnl NA other upstream 2492729 32880266 ~ 32929852 (-)
G128629 lrch1 other upstream 2554274 32941811 ~ 32942383 (-)
G128731 NA other upstream 2826570 33214107 ~ 33252272 (-)

Expression


Co-expression Network