rgcc (rgcc,LOC103363473,LOC104939188)


Basic Information

Item Value
gene id rgcc
gene name rgcc,LOC103363473,LOC104939188
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 30710701 ~ 30719451 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818742.1
GGGCTCGAGGGTTAGTTCAGGACCTGCAGGAGTTGTACACACAGCCGGACCTAGTGGGACTTTACACTGacggacatacagtacattattatttatttaacatatataacagatTTCGGATCATCTCCAACCTGATTACTGGAATAATGAAGTCTCCAAAGCTGAAACCTCAAGCGAAGCTGGCCAACGAGGAGGACCTGAGCGACGTGCTGTGCGAGTTCGACGCGGTGATGGAGGACTTCACGTCCCCGGTGGAGAAGCGACACTTTCGGTACGACGAGCACCTCAAGACcatgaagaggaggagcagcGCGAGCgtcagcgacagcggcatcagcGACTCCGAAAGTGCAGAGTCGCTCAACAGGAACAGCTTCAGCTTCAGCGATGAGAGGCTGAACTCCCCCACCGTGCTCTCCCCTGCCACCAGCTCACCTCCTCTTATGTCACCAAAACCCAAACTGGGCGACACTAAGGAACTGGAGGACTTCATTGCAGACCTTGACAGGACATTAGAGGGCATGTGACACGGAGGCTCACAGTCATCTTGGAGTGTAGCCATGAGGGAGTGCCTGTCTGGACCCCCGTCAACGGCTTGCATGCGCTaagccgccccccccccccacacacagaaaaaccacCCAACAGGATACAGCTGGATGGCACAGCAAACTTCCAAAGTGGCTCCACCACGGCTTCAGGTCTAGCCCAGTTAACCCAGCTCCACTAACTCCAGGCCACCTGGCTCCTGGGCTGTAAGGACTGCAAGAAGGGTCAAAAATAATTCTAGGGAACCTGAGGACAAGAATACTTCAGCAGCCATGATGTAATGGACTCCATGAAATGTTGTGAGGAATGAAAATGTGgcgatatactgtatatcctgcAAAAAGTCACTGGGGAAATGTATTGTCAGATTCACAAACCACCACACAGGCCAGGCTACACTCCCTCATCCCAAACTTGAGCTGAAAGAGTATTTAAAAAATGGCTTTTTATAATTGAAATATATTTGTAATTTTATagagcttcttttttttggggaaatatatttttgtatctcatGTAAATAATAATGGCTTCCCATTCTGTTTGCCTGGGTATTAACAGGACAGTCAGATTACGATTGTTTTGACGCTCGTTGACTGGAATAAAGTTACATGCTTAAATGTGAACTGAAAACTGGAAAGCAATATATGTCTATTTAATACAGCTAATGCCTGCCAGAGATGATATTAAAGTATGGAATATTGTTCTTTTAGTAA

Function

symbol description
rgcc Predicted to act upstream of or within regulation of cell cycle. Is expressed in several structures, including anterior neural keel; nervous system; neural plate; neural tube; and presumptive diencephalon. Orthologous to human RGCC (regulator of cell cycle).

NR:

description
regulator of cell cycle RGCC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818742.1 True 1265 mRNA 0.47 5 30710701 30719451

Neighbor

gene id symbol gene type direction distance location
dgkh dgkh,LOC102792327 coding downstream 166862 30458068 ~ 30543839 (-)
akap11 akap11 coding downstream 258470 30425640 ~ 30452231 (-)
tnfsf11 LOC104934832 coding downstream 323164 30374201 ~ 30387537 (-)
dbr1 LOC107551939,LOC101160048 coding downstream 640119 30059167 ~ 30070582 (-)
lcmt2 lcmt2 coding downstream 664946 30028665 ~ 30045755 (-)
f5 NA coding upstream 7488 30726939 ~ 30752392 (-)
ccdc80 LOC103363469 coding upstream 56868 30776319 ~ 30799641 (-)
kdm6a kdm6a coding upstream 266375 30985826 ~ 31054211 (-)
LOC120569688 NA coding upstream 670929 31390380 ~ 31395127 (-)
LOC120569690 NA coding upstream 679568 31399019 ~ 31405377 (-)
G128180 NA non-coding downstream 237440 30462258 ~ 30473261 (-)
G128184 NA non-coding downstream 297713 30409922 ~ 30412988 (-)
G128181 NA non-coding downstream 319783 30390666 ~ 30390918 (-)
G128147 NA non-coding downstream 379168 30329672 ~ 30331533 (-)
G128145 NA non-coding downstream 404348 30304114 ~ 30306353 (-)
G128241 NA non-coding upstream 14605 30734056 ~ 30773029 (-)
G128248 NA non-coding upstream 54323 30773774 ~ 30774860 (-)
G128253 NA non-coding upstream 55479 30774930 ~ 30776294 (-)
G128287 NA non-coding upstream 238490 30957941 ~ 30958718 (-)
G128288 NA non-coding upstream 249179 30968630 ~ 30968861 (-)
kcnh3 LOC102215587,LOC101479217,LOC102787819,LOC100702937,LOC102305604 other downstream 431171 30100506 ~ 30279530 (-)
G128026 LOC103372056,LOC102784025 other downstream 927496 29781954 ~ 29783205 (-)
G128025 plcl1 other downstream 933268 29777040 ~ 29777433 (-)
G127923 LOC103391627,LOC101464856 other downstream 1317558 29387976 ~ 29393143 (-)
G128435 NA other upstream 769571 31489022 ~ 31491705 (-)
LOC120569384 rps24,LOC102780737 other upstream 1163278 31882729 ~ 31936558 (-)
rubcnl NA other upstream 2160815 32880266 ~ 32929852 (-)
G128629 lrch1 other upstream 2222360 32941811 ~ 32942383 (-)
G128731 NA other upstream 2494656 33214107 ~ 33252272 (-)

Expression


Co-expression Network