kdm6a (kdm6a)


Basic Information

Item Value
gene id kdm6a
gene name kdm6a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 30985826 ~ 31054211 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817258.1
GGCGTGCGTTTGCCTATGTGACACAATTACAACAACTTTGAGCCGATGGTTGGGGAAGTTTGCGATATTACCAAGTAACACTCACTCCTAAAACCCAACATTACATCAACTTCATGCACACACTGGCACTGGAATACACGCTGTGTTTTGATGTACAATGAGGAGTGTGGAAGGTAACTTGAAGGGATCATTTCCTTGAGGATTTGGCAAGAATTACGCGACGCCCCGTTTTAGTCCTGGATAGGTGTGCAACACTTTTCGCTGTTATTGCATTTTGACGGAGTTACTCGGTCCCGTCGATTTGACCATTTCTTTTCCATGAAATCGTGCGGAGTGTCGCTCACCGCCGCTGCATCTGCTGCTGCCCGGAGCCTCGGCGTTGCTGCTGGTAATGACGAGGAGAAAATGGCGTCGGGAACAGCGACTGATATCGAAGAGGACTTTCCGAAGCTAACAGCGCAAGAAAAAGAGAGCTTGGTCGGAACTGACAGTTCACTGTTTGGATTTCACAGGCTTCAAGAAGATGGCGCCAGAACGAAGGCCTTGCTGTTAAAGGCTGTTCGCTGCTATGATGCCCTCATCCTGAAAGCAGAGGGGAAAGTGGACCCTGACATTTTCTGTCAGCTGGGCCACTTCAACCTCCTGCTGGAGGACTATCCAAAAGCATTATCTGCATACCAGAGGTACTTCAGTTTACAGTCGGACTACTGGAAGaatgctgcctttttatatgGCCTTGGCATGGTATACTTCCATTACAACGCATTTCAGTGGGCAATCAAGGCGTTCCAGGAGGTGCTTTACATCGACCCCGGCTTCTCGAGAAGTAAAGAGATTCACCTGAGACTGGGACTCATGTTTAAAGCCAACACAGACTACGAGTCAAGCCTAAAGCATTTTCAGCTGGCTTTGATCGACTCCAATCTCTGCACTTTGTCCAAAGCTGAAATTCAGTTCCACATTGCTCATTTGTATGAGATCCAGAAGAAGCACAGAGCGGCGAAAGAAGCGTATGAAAGTCTGTTGCAGACGGAGAATCTCCCTGCACAGGTGAAGGCGGCCACACTGCAACAACTTGGTGAGTGTCCCTTTGCTCATATTGATGTTTTACTAACCTTTTTGTCTCATTTCTcatgccttttctttttcttttcctttgtcCATCTACTGCCCTCCAGGTGCTACTCCAGTATTGGGAAGGTGCAGGATGCCTTCATCTCTTACCGTCAGTCCATTGATAAGTCGGAGGCCAGTGCTGACACCTGGTGCTCCATAGGGGTGCTCTACCAGCAGCAGAACCAGCCTATGGATGCACTGCAGGCCTACATCTGCGCTGTTCAACTGGACCACAGCCACGCAGCCGCCTGGATGGACCTGGGCACCCTCTACGAATCCTGCGGCCAGCCGCACGACGCTATCAAGTGCTACATCAACGCAACGCGCAGCAAGGCCTGCCTCAATACTGCTGCACTCACGCAACGCATTAAGCTGCTGCAGGCTCAGTTGTGTAACCTACAGCCAGATAGTCTGCAGAATAAGAGTAAAATGCTTCCTAGTATTGAGGAGGCGTGGAGCCTCCCCATTCCTGCTGAGCTCACGTCCAGGCAGGGGGCCTTGAACACTGCACAGGCACAGCAGGCCTGTAAGGGGGAGGGAGGCCAGTCGGCCAGCAATCACACAGACCCACAGGCCAGTCCTGCCAAGAGGAAACGCACTGCCAGCCCAGCTAAGGGTGTTGCAGACTCGTTGGCAAACAGCTCCAATCAACAGCAGATCCCCAGCTGGTACCTAACATCCCAGAAGCTTCAGCATCTGGATCTCTTGCGGACCAACCGAGCAAACCTCAAGCCCCCCCAGGTGCAGATGCTGGAGCAGCTGGAGAACCAGTTCTCCCTCATGCAgcaacatcagcagcagcagcagcagcagatgaGGCAGCAGGCCGCAGCGAGTGGCCAGCCGCGGCGCAGCCTTCCCAACGGTCCTTTGGCTGAGTCCTCTCACCACCACGCAGGCCTCTCCCGCGCCTCCCCCCTCAATCACACAGCCATCCGGCCCCCGTGTGTCCCCCAGCCCACAGCCAACGGATCCTGTTCTTCAAGTCCTTCAGCCGGGCCGCTGGGACACCTGGACAAAAACCACACGCTGGGACTGGGAGGTGGCGGCGCGAGCAACGGAAACGTGCCTTACCCGCAGCAGAACTCTCTACCTCACAACTGCACAGCCGCCAGTCACCCAAGCACCAGCAGCACTACTAGTAGTCCCAGTCACGCAGACGAGACATGGAGGAGCCAACAACGCAACACTACCACTCAGGGGCTTCAAAAAGGTCCAGGTTCCCATTCGGCAGGTCCCAATGGAGAACCCCCTTGCtcttcctcgtcctcctcccCTCAGACCTCGTTCTCTTCCTCTGGCCTTCTGAATCAGGTCGGACATTCCTCTGGGCCCTGCACggtctcctcctcagcctcctcTCTGTCCCCCACCTCCCCCCAGACCACGCCCAACCACTTGTCCTCGCCCCCCCACGCCGCTACTACCTCAGGGGTCCACACCAAAGACGCCACGCCTTCAGGGGGCAACACCGGCAGCAACGGCGCCGCCACTTTCCCATCAGGTCCGGAGGCCGCCGTCAGGCATTCCGCAGGGACGCCCCGAAGTCCCAGCACCGCCCCCGCGCAGGGACTGACTAATCACGTCCAGCCGCGGGTGACGGACGGCTCTCCCGCCCCCGGCGTGCTCAGTTCGGACAATCCTCAGCTCTCAGCCTTGCTAAAGGGAAAAGCCAATACCACCAGTAACGACGACAACAATAACTCCAGTAACCACGGAGGGCCTTCCTCGGAGAAAATCAACAACGTCCACCCGGGTCTCCACGATGCCGCCAAGCCAACGCCGGAGCAACCGGTGGCCTCCTCGCCGCGTTTAGCCGCTGCTACTCCCTCGCCGCGCTCGGCGCACCCTCACACCGCCAACAGCCTCTCCTGCCTTAACAGCCCGTCCACCACCAACAGCCAGGGGCCCACAGTCAATGGGAAGGGGCCCGAGGACTCCCAGAGCCCACTGAAGGTGGAGCCTTCCGGAGGAGCTCAGAGACACGGCGTCCCCGCTGGTCTGGCGCCCTGGTCCTCCGTCTCCATCTACCCCAGCTCCAGCGAGGTGCTCAAAGCATGCAGGAACCTGGGGAAGAACGGACTGTCGACGAGCAGCATCCTCCTGGACAAGTGTCCCCCGCCACGGCCCCCCCGCCCGCCCTCTCCTCCGCTGCCAAAGGACAAACTCAATCCCCCAACACCCAGTATTTATCTAGAAAACAAGAGGGACGCCTTCTTCCCTCCCCTCCACCAGTTCTGCACCAACCCTTCCAACCCGGTCACCGTCATCCGAGGGCTGGCTGGAGCGCTCAAACTAGATCTGGGCCTGTTCTCCACGAAGACGTTGGTGGAGGCCAACCCGGACCATCTGGTGGAGGTGCGGACCCAGCTGGCTCAGCCCACCGACGAGAACTGGGACCCCAGCGGCAACAGGAAGATGTGGCGCTGCGAGAGCAGTCGCTCCCACACCACGGTCATCAAATACGCCCAGTACCAGGCCTCGTCCTTCCAGGAGTCTCTGCGGGAGGAGaatgagaagaagaaggaggtgGAAACAGAAGCAGGTTCCTCAGACAGTGCGATGCGGCGAAGGAAAGGGTCTTTCAAACACCTAAAGTTTGGCACAAACATCGACCTCTCTGATGAAAAGAAGTGGAAACAGCAGCTTCAGGAGTTGTCCAAACTGCCGGCGTTTGCCCGCGTGGTGTCAGCCGGTAACCTGCTCAGCCACGTAGGACACACCATCCTGGGCATGAACACGGTCCAGCTCTACATGAAGGTGCCAGGCAGCCGCACGCCAGGTCACCAAGAGAACAACAATTTCTGTTCCGTCAACATCAACATCGGTCCCGGGGACTGCGAGTGGTTCGCCGTGCCGGAAACGTACTGGGGCGTCATCAACGACTTCTGTGAAATGAACAACATCAACTTCCTGATGGGCTCCTGGTGGCCCAACCTGGAGGACCTGTACGAGACCAACGTGCCCGTTTACCGGTTCATCCAGCGTCCCGGGGACCTGGTGTGGCTCAACACAGGCACCATCCACTGGGTGCAGGCCATCGGCTGGTGCAACAACATTGCGTGGAATGTCGGGCCCCTCACAGCACATCAGTACAAGCTGGCGGTGGAGCGCTACGAGTGGAACAAGCTGCAGAGTGTCAAATCCATCGTTCCCATGATCCACCTCTCCTGGAACATGGCCAGGAACATCAAAGTGTCGGACCACAGGCTCTTTGAGATGATCAAgtacTGTTTGTTACGGACTCTGAAGCAGTGTCAGATGCAGCGggagctgctgctggctgctgggAAAGACCTGGTGTGGCACGGGAGGACCCAGAGCGAGCCGGCACATTACTGCAGCATCTGTGAGGTGGAGGTGTTCGACCTGCTGTTTGTCACCACGGAGAGCAACAGCAGGAAGACGTACGTGGTGCACTGCCAGGACTGCGCCCGTCGGGGGAGCGCCAACCTGGACAACTTTGTGGTGCTGGAGCAGTACAAGATCGAGGACCTCATGCACGTTTACGACCAGTTCACACTCGCCAGTCCGCTGCCTTCCTCCTCTTGACGGTAACTCTGTTGTACCGAGGACAGTTAGAAAAAACCCACAACGGACTTAAATCGGAGGGGAGTGGGGGTGGGGTGGTGTGGGGGATAAACTCTCCGGAAaccttttttgttcttttctgaTATTCAGGAAGTAAGCCGGCAGTCCCTCAAAAAACGGCACTCTGTAGCTATCCCATAAGGCAGCTGCGTGAAAGCTGTGTGTCTATGCAACCTGCCCCGGTGGACTGTaagagagggtgggggggggggggggttgggggcaGCTCCGCCTGTCATCATGACCAGACTGTTCTACTGCTGGCCCAGCTGGACTTCACtagaaaataacacaaaaatcccacataaaaaaaaaaatgatgatttCAAGTTTTGTACATATTGTTTTAACTGGCAACACGGTCACACGACGACTACTGACTTGATAgttttgttcttcttttttaatttttttcctcaattgtttttttttggtattcTGTTTGTGAGATAACACgagccccctcctcctccctccctctctcctccctcctcctccccctcctcgaGACAAGTCTTTAGCATAGCCGGTCTTTTTGTATGTTAGATAGACGCCTCCTTGGTCAGGAAaaccagatttaaaaaaaaaaaaaaaaaagtacagttttGTAATGTGAAAAGTTGAGTGACACATTCTTTGCAACATCTcccccacacccacccaccctttTTCCCATCAGTTAATTTAATTTTGCTGGAACTATGATGAGTATTTGATGACTATTTGTTGGCGAGGAAAATAATTTGTTGACAAACAGCCAAGAGAGTCGCAGAAGAAAAGGGTTGCACATAGACAAAAGAGTGAagtttaatttgtgtttttttttttttattattttgatgtAAATTTACACTATTTATAAAATGCATATTTATTGCTTGAAGATATTTGTTGATGGAAtgctgtaatttttttttttttttttccagagtaCCTGCCATTAAATTTGAAGGAGCCTTGTGATTTTGAAAGCACGGCCCCTCATACGTtttctatataaataaactgctCAGTAAGCATTGTACAGAGA

Function

symbol description
kdm6a Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; chromatin DNA binding activity; and histone demethylase activity (H3-K27 specific). Acts upstream of or within several processes, including embryonic morphogenesis; face development; and germ cell migration. Predicted to be part of MLL3/4 complex. Is expressed in several structures, including blood island; ethmoid cartilage; otic vesicle; pharyngeal arch; and pronephric duct. Used to study Kabuki syndrome. Human ortholog(s) of this gene implicated in Kabuki syndrome; acute lymphoblastic leukemia; and esophagus squamous cell carcinoma. Orthologous to several human genes including KDM6A (lysine demethylase 6A).

NR:

description
lysine-specific demethylase 6A-like

GO: NA

KEGG:

id description
K11447 UTX, KDM6A; lysine-specific demethylase 6A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817258.1 True 5737 mRNA 0.54 29 30985826 31054211

Neighbor

gene id symbol gene type direction distance location
ccdc80 LOC103363469 coding downstream 186185 30776319 ~ 30799641 (-)
f5 NA coding downstream 233434 30726939 ~ 30752392 (-)
rgcc rgcc,LOC103363473,LOC104939188 coding downstream 266375 30710701 ~ 30719451 (-)
dgkh dgkh,LOC102792327 coding downstream 441987 30458068 ~ 30543839 (-)
akap11 akap11 coding downstream 533595 30425640 ~ 30452231 (-)
LOC120569688 NA coding upstream 336169 31390380 ~ 31395127 (-)
LOC120569690 NA coding upstream 344808 31399019 ~ 31405377 (-)
nyx nyx,LOC102775957 coding upstream 449980 31504191 ~ 31516333 (-)
ddx3xa ddx3x,LOC104933609,LOC101467955,LOC102776245 coding upstream 469274 31523485 ~ 31543222 (-)
nup35 NA coding upstream 495385 31549596 ~ 31557938 (-)
G128292 NA non-coding downstream 2428 30983121 ~ 30983398 (-)
G128288 NA non-coding downstream 16965 30968630 ~ 30968861 (-)
G128287 NA non-coding downstream 27108 30957941 ~ 30958718 (-)
G128253 NA non-coding downstream 209532 30774930 ~ 30776294 (-)
G128248 NA non-coding downstream 210966 30773774 ~ 30774860 (-)
G128376 NA non-coding upstream 2956 31057167 ~ 31064131 (-)
G128396 NA non-coding upstream 153517 31207728 ~ 31274045 (-)
G128410 NA non-coding upstream 295075 31349286 ~ 31350686 (-)
G128426 NA non-coding upstream 425608 31479819 ~ 31483858 (-)
G128445 NA non-coding upstream 496259 31550470 ~ 31551130 (-)
kcnh3 LOC102215587,LOC101479217,LOC102787819,LOC100702937,LOC102305604 other downstream 706296 30100506 ~ 30279530 (-)
G128026 LOC103372056,LOC102784025 other downstream 1202621 29781954 ~ 29783205 (-)
G128025 plcl1 other downstream 1208393 29777040 ~ 29777433 (-)
G127923 LOC103391627,LOC101464856 other downstream 1592683 29387976 ~ 29393143 (-)
G128435 NA other upstream 434811 31489022 ~ 31491705 (-)
LOC120569384 rps24,LOC102780737 other upstream 828518 31882729 ~ 31936558 (-)
rubcnl NA other upstream 1826055 32880266 ~ 32929852 (-)
G128629 lrch1 other upstream 1887600 32941811 ~ 32942383 (-)
G128731 NA other upstream 2159896 33214107 ~ 33252272 (-)

Expression


Co-expression Network