G128445


Basic Information

Item Value
gene id G128445
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 31550470 ~ 31551130 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU172827
cgtaATGAAATAATCTCTAGATGCTGCGCCCTACTGTGCATTTCTAGATGAATCTGGTGGTGCggtagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaactggttccaactagcctactgctcccaataagtgacaaaataacgccaacatgttcctatttccatgttgtgatttgtagagtcacagcgtgtacatataacaaggtcacatgacacacagccatcttctaaccgtatacatactgggaactatattctcagaaaggcgaagcactgctgcTCTCTGCTACTTAGGCGGAAGGATatgcacctgagaagccccgtggtgaggagcagagagtaacaacggtgcttttcaggtgttgtgctaaaaataaactttggaaacggacaacacaagggttaaaaagcg

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006376 mRNA splice site selection biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0008380 RNA splicing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172827 True 619 lncRNA 0.48 2 31550470 31551130

Neighbor

gene id symbol gene type direction distance location
ddx3xa ddx3x,LOC104933609,LOC101467955,LOC102776245 coding downstream 7248 31523485 ~ 31543222 (-)
nyx nyx,LOC102775957 coding downstream 34137 31504191 ~ 31516333 (-)
LOC120569690 NA coding downstream 145093 31399019 ~ 31405377 (-)
LOC120569688 NA coding downstream 155343 31390380 ~ 31395127 (-)
kdm6a kdm6a coding downstream 496259 30985826 ~ 31054211 (-)
frzb frzb,LOC102778849 coding upstream 51763 31602893 ~ 31626270 (-)
LOC120570281 NA coding upstream 451326 32002456 ~ 32003492 (-)
LOC120570286 NA coding upstream 457004 32008134 ~ 32009542 (-)
LOC120569388 NA coding upstream 546904 32098034 ~ 32099446 (-)
LOC120570290 NA coding upstream 564118 32115248 ~ 32116580 (-)
G128426 NA non-coding downstream 66612 31479819 ~ 31483858 (-)
G128410 NA non-coding downstream 199784 31349286 ~ 31350686 (-)
G128396 NA non-coding downstream 276425 31207728 ~ 31274045 (-)
G128376 NA non-coding downstream 486339 31057167 ~ 31064131 (-)
G128292 NA non-coding downstream 567072 30983121 ~ 30983398 (-)
G128463 NA non-coding upstream 166973 31718103 ~ 31814545 (-)
G128464 NA non-coding upstream 180328 31731458 ~ 31731988 (-)
G128466 NA non-coding upstream 225722 31776852 ~ 31777543 (-)
G128467 NA non-coding upstream 226993 31778123 ~ 31837660 (-)
G128471 NA non-coding upstream 256047 31807177 ~ 31812527 (-)
G128435 NA other downstream 58765 31489022 ~ 31491705 (-)
kcnh3 LOC102215587,LOC101479217,LOC102787819,LOC100702937,LOC102305604 other downstream 1270940 30100506 ~ 30279530 (-)
G128026 LOC103372056,LOC102784025 other downstream 1767265 29781954 ~ 29783205 (-)
G128025 plcl1 other downstream 1773037 29777040 ~ 29777433 (-)
G127923 LOC103391627,LOC101464856 other downstream 2157327 29387976 ~ 29393143 (-)
LOC120569384 rps24,LOC102780737 other upstream 331599 31882729 ~ 31936558 (-)
rubcnl NA other upstream 1329136 32880266 ~ 32929852 (-)
G128629 lrch1 other upstream 1390681 32941811 ~ 32942383 (-)
G128731 NA other upstream 1662977 33214107 ~ 33252272 (-)
G128764 cnot11 other upstream 1955913 33507043 ~ 33509076 (-)

Expression


Co-expression Network