nup35


Basic Information

Item Value
gene id nup35
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 31549596 ~ 31557938 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818500.1
CTAAACGCGCCGGAAGTTCAGCCAGTTAGCTGcaaatgctaacgttagcttatttTTCCAGTTTCCCAGTCAGTTCGCTCCAGCGACAGCGGCGCTGATCTCCCTGAAGACAGACTGCAGCGGACTGACATCTCCGATTTTAAACAACCGCTTACCTTTAACTAATTGGATGCTACAAGTTAACAATCCGCTTCGCTTAAGCAGACTTTCCAATAGCAGCGAGATATAGTTCTATATAGTGATACatcagttagcttagcttagcttagtttagcttagcaggCGTCACTTCCTACTTTTGAAACTCGCGGCCAGAAAGTAACGCAGCAGAGAGATGGAGCTACAAGTCGGGACCGAACCGATGACCCTGGGCTCTCCCACCTCCCCGAAGCCGACCCCTGGAGCTCAGTTTCTCCCCGGCTTCCTGATGGGTGACCTGCCCGCTCCGGCAACCCCCCAGCCACGCCCCTTCAGCCTGTCGTCGCCCATCGCCGAGAGCGCAGGTACGCCCCGAGGAGGCGGCGGGGGAAGAGGCTCTGCCCCGCAGCCCGTGGTCCCCACCCCCAAAGACAAGAGCGGAGCCCCTCCCGTTCGCAGTATCCACGATGACCTGGTTGCTGTGACGACGcccctcaacacacacagacagTCTTTTCCAGTGATGCAGACTCCCCTGTCTGCACGAGGGGCCTCAACTCCAGGTGCGCAGCAGTCGTGTCTGTCTCCAGCTCAGGTGGATCCCTTCTACAGTCAGGGAGAGTCTCTGTCATCTGACGACCAGCTGGACCAGACCTGGGTCACTGTTTTTGGttttcCTCCAGCCTCAGCCTCCTACATCCTGCTACAGTTCGCGCAGTACGGAAACATCCTCAAACACacgATGGCGTCTCCCGGTAACTGGATGCACCTTCAGTACCAGTCCAGGCTTCAGGCCCGGAAAGCTCTGTCTAAAGACGGGAAAGTGTTCGGCGACGCCATCATGGTGGGAGTCAAGCCCTGCATAGACAAGAGCGTGATGGACAGCAGCGCGGCGGTCTCGCCTCCCTTCTCcgcctccttctcctccccgGCCTTCCCCTCCACGCCTCGCTCCGCCATCCGGCCGCTCAGCGCCGCCTACAGGAGCTCCGCCAGCGACTACCAGGTgttagcagacagacagacacccaaGAAGGACGAAAGTTTGGTTTCCAAAGCGATGGAGTACATGTTTGGCTGGTGACGCAATGAATCATGGGATACCTGAAGCCTCCATGGACAGATCGATGAACTGATTCACTacactgtgtgtgagagtgtgtgtgagagagagagagagtgagtgtgtgtctgctggTGTGGAGGATAATGCTGTCTTTCTCTTATTTTAtaatcagtgtttttttaatgtctttgcatcaataaagttttttttgtcctgTTTGAA
>XM_039818501.1
AAACGCGCCGGAAGTTCAGCCAGTTAGCTGcaaatgctaacgttagcttatttTTCCAGTTTCCCAGTCAGTTCGCTCCAGCGACAGCGGCGCTGATCTCCCTGAAGACAGACTGCAGCGGACTGACATCTCCGATTTTAAACAACCGCTTACCTTTAACTAATTGGATGCTACAAGTTAACAATCCGCTTCGCTTAAGCAGACTTTCCAATAGCAGCGAGATATAGTTCTATATAGTGATACatcagttagcttagcttagcttagtttagcttagcaggCGTCACTTCCTACTTTTGAAACTCGCGGCCAGAAAGTAACGCAGCAGAGAGATGGAGCTACAAGTCGGGACCGAACCGATGACCCTGGGCTCTCCCACCTCCCCGAAGCCGACCCCTGGAGCTCAGTTTCTCCCCGGCTTCCTGATGGGTGACCTGCCCGCTCCGGCAACCCCCCAGCCACGCCCCTTCAGCCTGTCGTCGCCCATCGCCGAGAGCGCAGGAGGCGGCGGGGGAAGAGGCTCTGCCCCGCAGCCCGTGGTCCCCACCCCCAAAGACAAGAGCGGAGCCCCTCCCGTTCGCAGTATCCACGATGACCTGGTTGCTGTGACGACGcccctcaacacacacagacagTCTTTTCCAGTGATGCAGACTCCCCTGTCTGCACGAGGGGCCTCAACTCCAGGTGCGCAGCAGTCGTGTCTGTCTCCAGCTCAGGTGGATCCCTTCTACAGTCAGGGAGAGTCTCTGTCATCTGACGACCAGCTGGACCAGACCTGGGTCACTGTTTTTGGttttcCTCCAGCCTCAGCCTCCTACATCCTGCTACAGTTCGCGCAGTACGGAAACATCCTCAAACACacgATGGCGTCTCCCGGTAACTGGATGCACCTTCAGTACCAGTCCAGGCTTCAGGCCCGGAAAGCTCTGTCTAAAGACGGGAAAGTGTTCGGCGACGCCATCATGGTGGGAGTCAAGCCCTGCATAGACAAGAGCGTGATGGACAGCAGCGCGGCGGTCTCGCCTCCCTTCTCcgcctccttctcctccccgGCCTTCCCCTCCACGCCTCGCTCCGCCATCCGGCCGCTCAGCGCCGCCTACAGGAGCTCCGCCAGCGACTACCAGGTgttagcagacagacagacacccaaGAAGGACGAAAGTTTGGTTTCCAAAGCGATGGAGTACATGTTTGGCTGGTGACGCAATGAATCATGGGATACCTGAAGCCTCCATGGACAGATCGATGAACTGATTCACTacactgtgtgtgagagtgtgtgtgagagagagagagagtgagtgtgtgtctgctggTGTGGAGGATAATGCTGTCTTTCTCTTATTTTAtaatcagtgtttttttaatgtctttgcatcaataaagttttttttgtcctgTTTGAA

Function

NR:

description
nucleoporin NUP53-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG:

id description
K14313 NUP35, NUP53; nuclear pore complex protein Nup53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818500.1 True 1426 mRNA 0.55 9 31549596 31557938
XM_039818501.1 False 1412 mRNA 0.55 9 31549596 31557936

Neighbor

gene id symbol gene type direction distance location
ddx3xa ddx3x,LOC104933609,LOC101467955,LOC102776245 coding downstream 6374 31523485 ~ 31543222 (-)
nyx nyx,LOC102775957 coding downstream 33263 31504191 ~ 31516333 (-)
LOC120569690 NA coding downstream 144219 31399019 ~ 31405377 (-)
LOC120569688 NA coding downstream 154469 31390380 ~ 31395127 (-)
kdm6a kdm6a coding downstream 495385 30985826 ~ 31054211 (-)
frzb frzb,LOC102778849 coding upstream 44955 31602893 ~ 31626270 (-)
LOC120570281 NA coding upstream 444518 32002456 ~ 32003492 (-)
LOC120570286 NA coding upstream 450196 32008134 ~ 32009542 (-)
LOC120569388 NA coding upstream 540096 32098034 ~ 32099446 (-)
LOC120570290 NA coding upstream 557310 32115248 ~ 32116580 (-)
G128426 NA non-coding downstream 65738 31479819 ~ 31483858 (-)
G128410 NA non-coding downstream 198910 31349286 ~ 31350686 (-)
G128396 NA non-coding downstream 275551 31207728 ~ 31274045 (-)
G128376 NA non-coding downstream 485465 31057167 ~ 31064131 (-)
G128292 NA non-coding downstream 566198 30983121 ~ 30983398 (-)
G128463 NA non-coding upstream 160165 31718103 ~ 31814545 (-)
G128464 NA non-coding upstream 173520 31731458 ~ 31731988 (-)
G128466 NA non-coding upstream 218914 31776852 ~ 31777543 (-)
G128467 NA non-coding upstream 220185 31778123 ~ 31837660 (-)
G128471 NA non-coding upstream 249239 31807177 ~ 31812527 (-)
G128435 NA other downstream 57891 31489022 ~ 31491705 (-)
kcnh3 LOC102215587,LOC101479217,LOC102787819,LOC100702937,LOC102305604 other downstream 1270066 30100506 ~ 30279530 (-)
G128026 LOC103372056,LOC102784025 other downstream 1766391 29781954 ~ 29783205 (-)
G128025 plcl1 other downstream 1772163 29777040 ~ 29777433 (-)
G127924 LOC103391627,LOC101464856 other downstream 2161024 29388070 ~ 29388572 (-)
LOC120569384 rps24,LOC102780737 other upstream 324791 31882729 ~ 31936558 (-)
rubcnl NA other upstream 1322328 32880266 ~ 32929852 (-)
G128629 lrch1 other upstream 1383873 32941811 ~ 32942383 (-)
G128731 NA other upstream 1656169 33214107 ~ 33252272 (-)
G128764 cnot11 other upstream 1949105 33507043 ~ 33509076 (-)

Expression


Co-expression Network