LOC120544392 (grik1,LOC100705871,LOC102307112,LOC103360904)


Basic Information

Item Value
gene id LOC120544392
gene name grik1,LOC100705871,LOC102307112,LOC103360904
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40203295 ~ 40247024 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU31073
cagttgatTCCTTTCAGTGCTGTGATGAAGGACCTGGGTATGTCTTTAAAGTGTGACACGACAATGAAGAAAAACATCCAAACAAAGGGAAGGGCAGGATTAAACAGTATGTTCCTTTGCCAACCAAAACACACCTTTAGAAAAGAAACAGTCTGCACTTATCAAGGGTATTgagtttttaattatttagatTGTAATGATGTTTTCTATTCATTGATATACAGGTATTAATAAAGATGAATCACATATCGCTGTTTAATATGTTGTTTTAAATTGTGTACAGTGCAGCACTTTCAACCAGTATTAGTGCTTTAACCAAGTTGACAATTTGACAACATTTTGTAATCAATGTCCACTGTTAGGTACTGGTATTGTACTCAAGGGAATCAGCAACTGAAGATGTAATGTGATCTAACTGTTAATTCTGGACAAGAGATATTTTTGCAGTCCAGCTGTCAATTATAATATCAACAAACACTGGAAAATGCACTGTACTCTATCAACACCGGCACACATCACATGCATGAATAACCTACAGTATGTTGCTCATTTCGAAGGATGATGGCTTCCCCTGAATTTTGGGGATATTTTCTGCACTGCTAAGCTGAAAAAAAACGACTTCATGCTCAATCTAACtctcaaaacagtaaagttaattaaaaaacaatgtacttGGCAAAATTGCAGCCATCATTTCTGCTTTTCCAGTTTTGCAGCTCTTGACACTGATAAATTCCAACAATTTCTGCATGACTGGTTAAAATAATCGTACTCTTAATACAGTATGACTTCT
>XM_039778096.1
CTCCTTCTCAGTTGCAGCCTACAATTCAAGTGTgcactagaaaaaaaaaaacatgataagAGGGAAGTCTGGATAGTGAATATGGGAAGCAAAACCTTACTGGCACATTAAGGATTTTAGAATGGGAAAACTGGAGTTCTTTTGATCAGTGGCAGCTGCAGGTGgagtgtgtgttcttgtttttttccccctttctcaTCACAATGTGTGAGGGATGGATGTGGGTCGGATGCCAGTTTATTTTTGTTACGGATACAAGGACTGGCAAGTTATCAGCATGAATTACCGAGGGCAGAAAAACTGATATCAATGTTAAATTTGACTCTGGAGAGAGGACCATGGCGAAAAGGAAGGGACTGGTATTTGCACTGCTGTACTTTATAGCAGAGTTTTGGCTGACTTCGCAGCAGGTCCTGAGAATTGGCGGCATCTTTGAGACGCTTGAGAATGAGCCCATTAGTGTTGAAGAACTGGCCTTTAAATTCGCAGTAACCAACATAAACAGGAACCGGACCTTAATGCCAAACACCACATTGACCTATGACATCCAGAGAATAAACCTATTTGACAGTTTTGAGGCCTCGAGAAGAGCCTGCGACCAGTTGGCTCTGGGTGTTGGGGCCGTTTTTGGCCCCTCTCACAGCTCATCTGTCAGCGCGGTCCAGTCTATTTGTAACGCCCTGGAAGTCCCTCACATCCAGACCCGCTGGAAACACCCCTCAGTGGACAACAGAGACAGCTTCTTCATTAATCTCTATCCTGAATACACCTCCATAAGCCGAGCTGTGCTGGACATAGTGCAGTACTACAAGTGGAAGACGGTCACTGTTGTCTACGAGGACGCAACTGGACTGATTCGTTTGCAAGAGTTGATCAAAGCTCCATCCAGATACAGCATTAAAATCAAGATCCGCCAGCTGCCAACAGGAAGTAAAGATGCACGTCCTCTGTTGAAAGAGATGAAGAAAGGGAAGGAGTTCTACGTCATCTTTGACTGCTCTTACCAAACATCAGCTGATGTTCTCAAGCAGATCTTGTCCATGGGGATGATGACTGAATATTACCACTTCTTCTTCACCACACTGGACCTGTTCTCCCTCGACCTGGAGCCCTACCGCTACAGCGGGGTCAACATGACGGGGTTCAGACTGCTCAACATAGACAGCCCTCCGGTGGCCTCGGTGGTGGAGAGGTGGGCCATGGAGCGACTGCAGGCTCCCTCCAAAGCTGAGACTGGAATGATGGATGGGATGATGACAACTGAAGCCGCTCTGATGTACGATGCCGTCTACATGGTAGCCGCTGCCTCGCAACGCACCGCTCAGATCACCGTCAGCTCCCTTCAGTGCCACCGACACAAACCCTGGCGCTTTGGGTCACGCTTTATGAACATGCTCAAAGAAGCACAATGGAACGGCTTGACGGGACAAATAGTAATAAACAAGACAGACGGCCTGCGGAAAGAATTTGATTTAGATGTCATCAGCCTAAAGGAAGATGGCTTGGAGAAGACAATCACGGGCAACAACCGCCTGAATAAAGTGTGGAAAAAGATTGGTGTGTGGAACTCCCAAACAGGCCTTAATTTAACAGAGAGCAACAAGGACTCATCCACTAATGTGACCGACTCAATGGCCAACCGCACCCTTATTGTCACAACTATTCTGGAAAATCCTTATGTCATGTATAAGAAATCTGATAAGCCCCTGTATGGAAATGATCGCTTTGAGGGCTACTGCCTGGACCTGCTCAAAGAGCTCTCCAACATTTTGGGATTCTCCTATGAGGTAAAGCTGGTTTCTGATGGCAAATATGGAGCTCAGAATGACAAGGGAGAGTGGAACGGCATGGTGCGAGAACTCATTGACCATGTGGCTGACCTGGCCGTGGCCCCTCTTACTATCACATATGTAAGGGAAAAGGTGATCGATTTCTCCAAGCCCTTCATGACGCTAGGGATCAGCATCCTCTACCACAAACCCAACGGCACCAATCCAGGGGTGTTCTCCTTCCTCAACCCACTGTCTCCTGATATCTGGATGTATGTGCTACTGGCATGCCTCGGTGTCAGCTGTGTGCTGTTTGTTATTGCCAGATTCACTCCCTATGAGTGGTACAACCCTCACCCCTGTAACCCAGACTCGGATGTGGTTGAAAACAACTTCACTCTAATAAATAGTGTGTGGTTTGGAGTTGGAGCACTTATGCAGCAAGGATCCGAACTGATGCCTAAGGCCCTCTCTACGAGGATAGTCGGTGGAATATGGTGGTTCTTTACATTAATCATAATCTCCTCATACACTGCTAACTTGGCTGCCTTCCTCACTGTGGAGAGAATGGACTCGCCAATCGACTCTGCAGATGACTTGGCCAAACAAACCAAAATAGAGTACGGTGCCGTAAGAGACGGCTCCACCATGACCTTTTTTAAGAAATCTAAGATCTCAACTTACGAGAAAATGTGGGCATTCATGAGCAGCAGGAAAAACACAGCTTTGGTGAAAAACAACCGGGAGGGGATTCAGAGGGTTCTCACCACAGACTACGCTCTCCTGATGGAATCGACCAGCATCGAGTACATCAGCCAGCGTAACTGCAACCTCACACAGATTGGAGGCTTGATAGATTCAAAGGGCTATGGAGTGGGGACCCCGATTGGCTCCCCTTACAGAGACAAGATCACCATCGCCATCTTGCAGCTTCAGGAGGAAGGGAAGCTGCACATGATGAAGGAGAAATGGTGGAGAGGGAATGGCTGCCCAGAGGAGGACAGCAAAGAGGCCAGTGCTCTGGGTGTGGAGAACATAGGGGGAATCTTTATTGTGCTGGCAGCTGGACTTGTTCTATCAGTTTTTGTAGCAATTGGAGAGTTTATTTACAAATCCAGAAAGAACTTGGACATTGAGGAGGTGAGTGTTGGTCAGTGCGAATGGCACAACAAGTATTAACACACTAGGGGACTTTATCGAAGACTGTTATGAACCCTACTACACATTTGCGTTGTCATTGTTGTCTTCAGAGGACTACAGTAATCACTGGGCCAACAAAAATTTGAAGTCTGAATGTGTTGAACTGCATTGTTACAATCAAAACAGAAATACTTTTTAATGCAGATTTTAGTGTTTTCAGTAGTTTTGACGTAGAGCACATGGATGTTTTAGTCTTCATTGGAAGAATACATTTGAACCCCTTTTTATGATGGATGGTTGTTTACTTCTGACATCATGACACATGACATTCTTGGCCTTGCTGTTTCTTTTGCAAAAAAACTAACAttgttttgtgtgaaaaaaGAATTGTCATGCCATGTGGGTAAGTAATGCTGTGATGATTGTAAGTGTTATCTTTTGAGTCATGTTTGCCATGTTCATTTCAACAACTGCAGTAGGTTTGAGAGTATTCTGTTATTAAATGTTTGCAATTTTCATATTTATAGCACACAGAAACTTTTACATAACAGCACTTATTCTTACCACTTTTGTATGTACTCatgtatttcaaaaaaaaatctttgatttatttaatgacgGTCATTTCCAATTTGTTTATGAATGAGTGTTCctacaaaatgttatttaagtTGCTTGACACTCAGGCCATCAGTTGCTTACGGTCTATACttcttttttattatgaagttcATAAACATGCATGTATATGTTTCGTCATGTTGGAATTGTTTCAGAATGACTAAAGTTATGTGAGAACATtacatcctttaaccttt
>XM_039778103.1
TCCTCCTTCTCAGTTGCAGCCTACAATTCAAGTGTgcactagaaaaaaaaaaacatgataagAGGGAAGTCTGGATAGTGAATATGGGAAGCAAAACCTTACTGGCACATTAAGGATTTTAGAATGGGAAAACTGGAGTTCTTTTGATCAGTGGCAGCTGCAGGTGgagtgtgtgttcttgtttttttccccctttctcaTCACAATGTGTGAGGGATGGATGTGGGTCGGATGCCAGTTTATTTTTGTTACGGATACAAGGACTGGCAAGTTATCAGCATGAATTACCGAGGGCAGAAAAACTGATATCAATGTTAAATTTGACTCTGGAGAGAGGACCATGGCGAAAAGGAAGGGACTGGTATTTGCACTGCTGTACTTTATAGCAGAGTTTTGGCTGACTTCGCAGCAGGTCCTGAGAATTGGCGGCATCTTTGAGACGCTTGAGAATGAGCCCATTAGTGTTGAAGAACTGGCCTTTAAATTCGCAGTAACCAACATAAACAGGAACCGGACCTTAATGCCAAACACCACATTGACCTATGACATCCAGAGAATAAACCTATTTGACAGTTTTGAGGCCTCGAGAAGAGCCTGCGACCAGTTGGCTCTGGGTGTTGGGGCCGTTTTTGGCCCCTCTCACAGCTCATCTGTCAGCGCGGTCCAGTCTATTTGTAACGCCCTGGAAGTCCCTCACATCCAGACCCGCTGGAAACACCCCTCAGTGGACAACAGAGACAGCTTCTTCATTAATCTCTATCCTGAATACACCTCCATAAGCCGAGCTGTGCTGGACATAGTGCAGTACTACAAGTGGAAGACGGTCACTGTTGTCTACGAGGACGCAACTGGACTGATTCGTTTGCAAGAGTTGATCAAAGCTCCATCCAGATACAGCATTAAAATCAAGATCCGCCAGCTGCCAACAGGAAGTAAAGATGCACGTCCTCTGTTGAAAGAGATGAAGAAAGGGAAGGAGTTCTACGTCATCTTTGACTGCTCTTACCAAACATCAGCTGATGTTCTCAAGCAGATCTTGTCCATGGGGATGATGACTGAATATTACCACTTCTTCTTCACCACACTGGACCTGTTCTCCCTCGACCTGGAGCCCTACCGCTACAGCGGGGTCAACATGACGGGGTTCAGACTGCTCAACATAGACAGCCCTCCGGTGGCCTCGGTGGTGGAGAGGTGGGCCATGGAGCGACTGCAGGCTCCCTCCAAAGCTGAGACTGGAATGATGGATGGGATGATGACAACTGAAGCCGCTCTGATGTACGATGCCGTCTACATGGTAGCCGCTGCCTCGCAACGCACCGCTCAGATCACCGTCAGCTCCCTTCAGTGCCACCGACACAAACCCTGGCGCTTTGGGTCACGCTTTATGAACATGCTCAAAGAAGCACAATGGAACGGCTTGACGGGACAAATAGTAATAAACAAGACAGACGGCCTGCGGAAAGAATTTGATTTAGATGTCATCAGCCTAAAGGAAGATGGCTTGGAGAAGACAATCACGGGCAACAACCGCCTGAATAAAGTGTGGAAAAAGATTGGTGTGTGGAACTCCCAAACAGGCCTTAATTTAACAGAGAGCAACAAGGACTCATCCACTAATGTGACCGACTCAATGGCCAACCGCACCCTTATTGTCACAACTATTCTGGAAAATCCTTATGTCATGTATAAGAAATCTGATAAGCCCCTGTATGGAAATGATCGCTTTGAGGGCTACTGCCTGGACCTGCTCAAAGAGCTCTCCAACATTTTGGGATTCTCCTATGAGGTAAAGCTGGTTTCTGATGGCAAATATGGAGCTCAGAATGACAAGGGAGAGTGGAACGGCATGGTGCGAGAACTCATTGACCATGTGGCTGACCTGGCCGTGGCCCCTCTTACTATCACATATGTAAGGGAAAAGGTGATCGATTTCTCCAAGCCCTTCATGACGCTAGGGATCAGCATCCTCTACCACAAACCCAACGGCACCAATCCAGGGGTGTTCTCCTTCCTCAACCCACTGTCTCCTGATATCTGGATGTATGTGCTACTGGCATGCCTCGGTGTCAGCTGTGTGCTGTTTGTTATTGCCAGATTCACTCCCTATGAGTGGTACAACCCTCACCCCTGTAACCCAGACTCGGATGTGGTTGAAAACAACTTCACTCTAATAAATAGTGTGTGGTTTGGAGTTGGAGCACTTATGCAGCAAGGATCCGAACTGATGCCTAAGGCCCTCTCTACGAGGATAGTCGGTGGAATATGGTGGTTCTTTACATTAATCATAATCTCCTCATACACTGCTAACTTGGCTGCCTTCCTCACTGTGGAGAGAATGGACTCGCCAATCGACTCTGCAGATGACTTGGCCAAACAAACCAAAATAGAGTACGGTGCCGTAAGAGACGGCTCCACCATGACCTTTTTTAAGAAATCTAAGATCTCAACTTACGAGAAAATGTGGGCATTCATGAGCAGCAGGAAAAACACAGCTTTGGTGAAAAACAACCGGGAGGGGATTCAGAGGGTTCTCACCACAGACTACGCTCTCCTGATGGAATCGACCAGCATCGAGTACATCAGCCAGCGTAACTGCAACCTCACACAGATTGGAGGCTTGATAGATTCAAAGGGCTATGGAGTGGGGACCCCGATTGGCTCCCCTTACAGAGACAAGATCACCATCGCCATCTTGCAGCTTCAGGAGGAAGGGAAGCTGCACATGATGAAGGAGAAATGGTGGAGAGGGAATGGCTGCCCAGAGGAGGACAGCAAAGAGGCCAGTGCTCTGGGTGTGGAGAACATAGGGGGAATCTTTATTGTGCTGGCAGCTGGACTTGTTCTATCAGTTTTTGTAGCAATTGGAGAGTTTATTTACAAATCCAGAAAGAACTTGGACATTGAGGAGttgatTCCTTTCAGTGCTGTGATGAAGGACCTGGGTATGTCTTTAAAGTGTGACACGACAATGAAGAAAAACATCCAAACAAAGGGAAGGGCAGGATTAAACAGTATGTTCCTTTGCCAACCAAAACACACCTTTAGAAAAGAAACAGTCTGCACTTATCAAGGGTATTgagtttttaattattta

Function

symbol description
grik1 Enables kainate selective glutamate receptor activity. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within several processes, including chemical synaptic transmission; modulation of chemical synaptic transmission; and positive regulation of gamma-aminobutyric acid secretion. Predicted to be located in dendrite; postsynaptic density; and presynaptic membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in glutamatergic synapse and postsynaptic membrane. Predicted to be integral component of presynaptic membrane. Implicated in childhood absence epilepsy.

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 1 isoform X1

GO: NA

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU31073 False 793 lncRNA 0.46 1 40246232 40247024
XM_039778096.1 True 3727 mRNA 0.45 16 40203297 40244030
XM_039778103.1 False 3097 mRNA 0.47 17 40203295 40246420

Neighbor

gene id symbol gene type direction distance location
LOC120544430 NA coding upstream 2495 40199199 ~ 40200800 (+)
cldn8.1 LOC104963591,LOC103360906,LOC107095575,LOC101073605 coding upstream 6287 40195752 ~ 40197008 (+)
LOC120544445 LOC103378146,LOC104923282,LOC104963590 coding upstream 8372 40193200 ~ 40194923 (+)
LOC120544458 cldn8 coding upstream 11605 40190537 ~ 40191690 (+)
LOC120551839 tiam1,LOC103360909 coding upstream 42112 40143850 ~ 40161183 (+)
rwdd2b rwdd2b coding downstream 21328 40268352 ~ 40270936 (+)
gbe1b gbe1,LOC102793958 coding downstream 339921 40586945 ~ 40739689 (+)
LOC120572580 NA coding downstream 500920 40747944 ~ 40773831 (+)
foxo1a foxo1,LOC100706939,LOC107095350,LOC106520575 coding downstream 599143 40846167 ~ 40880395 (+)
LOC120546748 lhfp,lhfpl1 coding downstream 709333 40956357 ~ 41016383 (+)
G22837 NA non-coding upstream 125578 40077387 ~ 40077717 (+)
G22832 LOC104946755,LOC101062627,LOC107095568 non-coding upstream 178254 40024692 ~ 40025041 (+)
G22831 LOC102201911,LOC101478053,LOC102303851,LOC107095568 non-coding upstream 238387 39964682 ~ 39964908 (+)
G22830 LOC103363423,LOC104943853 non-coding upstream 244224 39958348 ~ 39959071 (+)
G22829 NA non-coding upstream 253815 39949281 ~ 39949480 (+)
G22887 NA non-coding downstream 4138 40251162 ~ 40251367 (+)
G23024 NA non-coding downstream 577274 40824298 ~ 40833161 (+)
G23050 NA non-coding downstream 676017 40923041 ~ 40926286 (+)
LOC120552120 NA non-coding downstream 1074659 41321683 ~ 41329037 (+)
G23166 NA non-coding downstream 1104398 41351422 ~ 41351680 (+)
tiam1b tiam1,LOC103360909 other upstream 17159 40161282 ~ 40186136 (+)
G22827 LOC103363423 other upstream 257420 39943575 ~ 39945875 (+)
G22731 NA other upstream 517269 39682645 ~ 39686026 (+)
brca2 NA other upstream 963847 39222726 ~ 39239448 (+)
robo1 robo1 other upstream 1898505 37934936 ~ 38304790 (+)
mtus2b mtus2 other downstream 529649 40776673 ~ 40820646 (+)
fndc3a fndc3a other downstream 905423 41152447 ~ 41222488 (+)
trpc6b trpc6,LOC103377966 other downstream 1606590 41853614 ~ 41867364 (+)
G23411 NA other downstream 2455517 42702541 ~ 42703045 (+)
G23605 NA other downstream 3158869 43405893 ~ 43410410 (+)

Expression


Co-expression Network