LOC120544458 (cldn8)


Basic Information

Item Value
gene id LOC120544458
gene name cldn8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40190537 ~ 40191690 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778217.1
TACAGGCATGGTGACATCACAGATTTAAAGCTCTGCAAAACATATTGGTTGAGCAGTCTTTTTCCTTAGATGACAGCCAAGAGACAAGACTGCCCTTCCCTCTGAGCCATGAGAGCAAAGTTGGAGGTCTTAGCCCTGGTCTTGGGCTTCATCGGCCTGGTTGGGACCATAGCGGTCACTGCCATGCCCATGTGGAGGGTCTCTGCCTTCATTGGTGCCAATCTCATTGTCATGGAGGAACTCTGGGAGGGCTTGTGGATGGATTGCTACAGACAGGCCAACATCAGGATGCAGTGCAAGGTGTATGACTCCGTGCTAATTCTTCCACTCGAGCTGCAGGCGGCCAGGGGGCTCATGTGCGTGTCCATAGTCCTGGTTGTCATCTCTCTGTCCTTCACAGGATGTGGGACCAAGAAGAGCAATTGTTGTGACGACAGCAGAAAAGGCAAGAACATCACTCTGGCCTTAGCGGGGGGTTTCTATCTGCTTTCCTCTTTGACCACACTCATCCCTGTCAGCTGGGTGGGCCATACTGTCATCAGCAACTTTTACAACCCAACGGTGCTGGAGTCTCAGAAACGGGAGCTGGGGAAGGCCCTCTTCATTGGCTGGGCCACTTCTGGTATTCTGCTGATCACAGCGGTCATCCTTCTGTTCAGCTACAGCAAACGTAGCTCAAAGGAGGAAGAGTCCTACACCGACGCACATTTTATGGCGGCAAGGGATGTACAGAAAGAGGATATTGTGTACCTGGGGAGAACGCCATCCAGCTTTCATAAGCATCAAGAATATGTGTAAAGAACTGAACTTTATTGCCTGAAATATGCAATTTCTACTTTCCATGTGTCTAAGATTTGAAAGATGTTGCCTGAAGGTCAAGAAGATGCAAATTATGTGTATGTTTTCACTACCTATTTACACATTTTAATCACTCtgtttaaatgaataatgtactTGTGTTCTTATTGCACTATGAATTGTTCTCATGTCCATTGTTTGTATTGTCAGCCCAAATCCTTCACAGTTTATGCATTcagttagcctgacaagccagacccacatccagatgttgggtatgggaactcaccattgacagggctcaatcagaggggcgggataaactgttgtctttcaaattccgtctgcacgcaata

Function

symbol description
cldn8 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Located in endoplasmic reticulum and plasma membrane.

NR:

description
PREDICTED: claudin-8

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778217.1 True 1154 mRNA 0.47 1 40190537 40191690

Neighbor

gene id symbol gene type direction distance location
LOC120551839 tiam1,LOC103360909 coding upstream 29354 40143850 ~ 40161183 (+)
LOC120544406 NA coding upstream 63107 40086285 ~ 40127430 (+)
urb1 urb1 coding upstream 106241 40058779 ~ 40084296 (+)
frem2b LOC103363427,LOC102301626,LOC101479746 coding upstream 325117 39796797 ~ 39865420 (+)
LOC120551823 NA coding upstream 468588 39716242 ~ 39721949 (+)
LOC120544445 LOC103378146,LOC104923282,LOC104963590 coding downstream 1510 40193200 ~ 40194923 (+)
cldn8.1 LOC104963591,LOC103360906,LOC107095575,LOC101073605 coding downstream 4062 40195752 ~ 40197008 (+)
LOC120544430 NA coding downstream 7509 40199199 ~ 40200800 (+)
rwdd2b rwdd2b coding downstream 76662 40268352 ~ 40270936 (+)
gbe1b gbe1,LOC102793958 coding downstream 395255 40586945 ~ 40739689 (+)
G22837 NA non-coding upstream 112820 40077387 ~ 40077717 (+)
G22832 LOC104946755,LOC101062627,LOC107095568 non-coding upstream 165496 40024692 ~ 40025041 (+)
G22831 LOC102201911,LOC101478053,LOC102303851,LOC107095568 non-coding upstream 225629 39964682 ~ 39964908 (+)
G22830 LOC103363423,LOC104943853 non-coding upstream 231466 39958348 ~ 39959071 (+)
G22829 NA non-coding upstream 241057 39949281 ~ 39949480 (+)
G22887 NA non-coding downstream 59472 40251162 ~ 40251367 (+)
G23024 NA non-coding downstream 632608 40824298 ~ 40833161 (+)
G23050 NA non-coding downstream 731351 40923041 ~ 40926286 (+)
LOC120552120 NA non-coding downstream 1129993 41321683 ~ 41329037 (+)
G23166 NA non-coding downstream 1159732 41351422 ~ 41351680 (+)
tiam1b tiam1,LOC103360909 other upstream 4401 40161282 ~ 40186136 (+)
G22827 LOC103363423 other upstream 244662 39943575 ~ 39945875 (+)
G22731 NA other upstream 504511 39682645 ~ 39686026 (+)
brca2 NA other upstream 951089 39222726 ~ 39239448 (+)
robo1 robo1 other upstream 1885747 37934936 ~ 38304790 (+)
LOC120544392 grik1,LOC100705871,LOC102307112,LOC103360904 other downstream 11605 40203295 ~ 40247024 (+)
mtus2b mtus2 other downstream 584983 40776673 ~ 40820646 (+)
fndc3a fndc3a other downstream 960757 41152447 ~ 41222488 (+)
trpc6b trpc6,LOC103377966 other downstream 1661924 41853614 ~ 41867364 (+)
G23411 NA other downstream 2510851 42702541 ~ 42703045 (+)

Expression


Co-expression Network