cldn8.1 (LOC104963591,LOC103360906,LOC107095575,LOC101073605)


Basic Information

Item Value
gene id cldn8.1
gene name LOC104963591,LOC103360906,LOC107095575,LOC101073605
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40195752 ~ 40197008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778206.1
gatGCAAAGCCGCCACATCTACTGCTTTCCACTATAGTCACACTGTGCGCTAACGTTATTACGTATGAGGAGGACAGGATGGCCAACTCAGCACTGGAGATAGTGGGTCTATTATTGACCCTGATTGGGTTGATTGGGGCGGCAGCAAGCACTGGGATGCCGATGTGGCGAGTCACAGCCTTCATTGGGGAGAACATCATTGTCATGGAGACCCGCTGGGAGGGTTTGTGGATGAACTGCTTCAGACAAGCCAACATCAGAATGCAGTGCAAGGTGTACGATTCTCTCCTGGCCCTGTCCCCTGATCTACAGGCGGCACGGGGGCTCATGTGCTGCGCTGTGGCGCTGGCTGGCCTCGGTATTCTGATCAGTTTACTGGGGATGCAGTGCACCTCATGTATTGCAAACAACGACCGAGCTAAGCGGCTGGTCCTCATCATTGCAGGAAGCATGATAATATTGGCTTGCCTCTGCTGTGTTATTCCTGTGTCCTGGACAGGTCACGTCATCATCACGGACTTCTACAACCCCTTGCTGATCGACGCCCAACGAAGGGAGCTCGGAGAGGCTCTCTACATCGGCTGGGTGGCCTCTGCTTTCTTGTTGGCTGGAGGATGCATGTTTATGTGTTGCAATCTGCAGTCTGAGGATAAAGGTTCAGAGAGGTATGTGTACTCAAGGAACTCCGATTACATGGCATATCCTCCACAGCAACTACAGCCTCAACAGCTGGTGAGGTTTCCCCAAACACATCCTCAATTTCAGCCAGTGCTGTCAAGACACCCATCAACCAACTACAGCTACCAGTCCAGACAACCGTCTGTCCGCAGCGGGGTGGCTTATCTCTGAACACTCAAACTGACTTTGGTAATGATGATCAGTTATGGTCAACATGCAGCACAATCTATGACACATTTCAAATGTCAAAAGGtaaaaacatgtcaataaatagATGCACTGTGAATGCAAATTTATTGGATTAATATGGATGGGTTTTGTCTTTTCATACACTTGTGGAGTAGCTAATTGCTTGTCACTAGTTATTATTAGCCTATAGCATAATTATAACCCTGACTTTCTAAGCCAAAGCATGATTACCATTACTTTTATGTGTTGTACAATCACATTTTATACTGACAGTCTTATCTTTTGTATATCATGTTACAAATTTTGTACATGTGTGATGGAAGTTTCTTTGCAGCAGGAGTGGATTTTAGGTTagaaaagtgaaacaaataaagacagttgaagactaaa

Function

NR:

description
PREDICTED: claudin-4-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778206.1 True 1257 mRNA 0.46 1 40195752 40197008

Neighbor

gene id symbol gene type direction distance location
LOC120544445 LOC103378146,LOC104923282,LOC104963590 coding upstream 829 40193200 ~ 40194923 (+)
LOC120544458 cldn8 coding upstream 4062 40190537 ~ 40191690 (+)
LOC120551839 tiam1,LOC103360909 coding upstream 34569 40143850 ~ 40161183 (+)
LOC120544406 NA coding upstream 68322 40086285 ~ 40127430 (+)
urb1 urb1 coding upstream 111456 40058779 ~ 40084296 (+)
LOC120544430 NA coding downstream 2191 40199199 ~ 40200800 (+)
rwdd2b rwdd2b coding downstream 71344 40268352 ~ 40270936 (+)
gbe1b gbe1,LOC102793958 coding downstream 389937 40586945 ~ 40739689 (+)
LOC120572580 NA coding downstream 550936 40747944 ~ 40773831 (+)
foxo1a foxo1,LOC100706939,LOC107095350,LOC106520575 coding downstream 649159 40846167 ~ 40880395 (+)
G22837 NA non-coding upstream 118035 40077387 ~ 40077717 (+)
G22832 LOC104946755,LOC101062627,LOC107095568 non-coding upstream 170711 40024692 ~ 40025041 (+)
G22831 LOC102201911,LOC101478053,LOC102303851,LOC107095568 non-coding upstream 230844 39964682 ~ 39964908 (+)
G22830 LOC103363423,LOC104943853 non-coding upstream 236681 39958348 ~ 39959071 (+)
G22829 NA non-coding upstream 246272 39949281 ~ 39949480 (+)
G22887 NA non-coding downstream 54154 40251162 ~ 40251367 (+)
G23024 NA non-coding downstream 627290 40824298 ~ 40833161 (+)
G23050 NA non-coding downstream 726033 40923041 ~ 40926286 (+)
LOC120552120 NA non-coding downstream 1124675 41321683 ~ 41329037 (+)
G23166 NA non-coding downstream 1154414 41351422 ~ 41351680 (+)
tiam1b tiam1,LOC103360909 other upstream 9616 40161282 ~ 40186136 (+)
G22827 LOC103363423 other upstream 249877 39943575 ~ 39945875 (+)
G22731 NA other upstream 509726 39682645 ~ 39686026 (+)
brca2 NA other upstream 956304 39222726 ~ 39239448 (+)
robo1 robo1 other upstream 1890962 37934936 ~ 38304790 (+)
LOC120544392 grik1,LOC100705871,LOC102307112,LOC103360904 other downstream 6287 40203295 ~ 40247024 (+)
mtus2b mtus2 other downstream 579665 40776673 ~ 40820646 (+)
fndc3a fndc3a other downstream 955439 41152447 ~ 41222488 (+)
trpc6b trpc6,LOC103377966 other downstream 1656606 41853614 ~ 41867364 (+)
G23411 NA other downstream 2505533 42702541 ~ 42703045 (+)

Expression


Co-expression Network