rnf139 (rnf139,LOC106674496)


Basic Information

Item Value
gene id rnf139
gene name rnf139,LOC106674496
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 30571463 ~ 30658439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU185404
tgtgagtgtgtttgtgcgctGGGGCTGCACGATGTAGACCAAAAACTCCTACTGTTGTTATTTTATCCCAGAATTATTGGAGCTCCTGATAACAAATGTTGCGATGTGGCCACAGCTGTCTCTACACTGTTTATTTCCCAACGCCTCAAAGCTGACACTCATCAGTAAGTTATTTTATCCGATTTTTCTGCGACATATATTCTGCACAGCACAAGTCTCCCTTGTTGAGCGAGCGCGCTGTTGAAAGTTCTTCttccaaagaaaagaaaaaagatcatGACTTGGTTTAGATTTTGTCACTTATGCAGCCTGTGTGcgtgcttgtttaactatatttgtggggtccaaaaaccgggagtccagtatacctGTGGGTTCCCAACAGCTTTGTgaggccaaaatgctggaccccacgagtttaaagggctgtttgagggttaagacttggttttaggattagggttagaattaggttatggttagggtgagggtaagggttaaggttaagcatttagttgtgatagtTAGGGTAAgaggctagggaatgcattatgttaatggcgggtccccacaaagatagtgccacaaacgtgtgtgtgtgtgcgtgcgtgtcgtGTAATGTGCGTAGACGATGTCTTAAAGATGCAGTTCCTGTTCCCTAGCAGTGTGTTTATAAGGGAAATGCtgaagtgtgtttgtgcataaaCGGCAAAACTGTGGAGCGCATAAACAAATTCAAGCTTTAATCTGCAAGTCAGGATGGAGGAGTTTTTAGTAGGGCCCCCATTTGAGCGTAAAAACACATTCTAGTTTGCTTCCGTTTGAAAACCTGCTGTCGTTACTTTCCTCCAGCTTTTTGCCAAATGTGATTGGTCAACATACACTTATTTGTCCGTAGCGCACTCAAAACATAGATTACACTCTTACGCTCTTACTAAACCAGCCTCGACTGCTCTCAAAATCCTGACTTTCAGATTGATCACAGCTCAAGTTTGCGATTCACTCATTTTTGTCCCCAACTAACTTAAACAGAGTATTTTTGTGAACttgtccagagagagagagagagagagggggggcaggaGAGTGAAGCAGTTTTCTATCAACTCTGAGAAAAACTGAGAggtctgatttaaaaaaagaaaaaacaaaagaaaggtGACTTGCTACTGTAATCACTGATATACCTCTATCATTACTTACTACTGGTCTCTTGTGTGACCTCACTTACAATTGTGTACGTTATTGTACatataataaaacaaacctGTGCACACGTTCTCCCTTAGGACGAGAGAAGTTTGTTTTcggtttctttttgttttttcaattatGCAAATTTCAGATTTTCTCTCGCATAAATCAGTATTTAGTTTGCTTAAATTCTTGTTTCAAAACCCAGAAATTGTTGCTTATAATGGTATTGGCTggtattcaacaacaaaaatagcATGTTTTGGGTGAAAAGATTATTCCTCGATGCTCCTCAGTAAAAGTCACAAAGGTACAGCATGAAAAGGTTCCACTTATTTAGTCAACTATGGACTTTAAGTACTTGCatttctttcaaaaaaaaaaaaaagtaccataTTTGCTTTCACGTTTTGGTTATTGGTCATGTTTTAAGAGCAGATGTCATTTTTGTTCCCATAACAGACCTTTTTTTGGTTTCTAGTCACTGGTACAGACGGAAACGTTCTCGTTCTGTTCGACTTTTGGCAACAAACTAAAACGACCGCAACCTTTTCTCAagtctcaaactgtgtttttggaATTGATGAGATGAATACAtttcataattaaaaaaaaaaataaaaaatcttacGGAGCTGCAGAAAAGTCTTGAATTTTACAGATATGTTTTGTTGCGGTAAACTCCGACTTGAACTGTTCCTGAAGTGGCCAAGACCCTGTCGTGGCGTGACAATTCTGTGATTATTTATCGTCCTGTTGAGCTCCCCGACTGAACACTGATCCAAAAATCTTTTAACCACTCGGAACGAAAAGAAAGACCCTGAAAAATATCCAGAAGCCACgttttcacattttttaaatttttttttttattaagaccGTATATAGCTCGGCCAATACAGATCCCTCCGGTTTTTCATcgcgagtaaaaaaaaaagtgaatttaaaaACGCTTTTCGAGCACAACTCCTCTTTTGAGTATTACATTGTTTAGACTTCCACAGCCTGAACGTCCTTAAAGGGTTTGACTGCAAACTCAAATGTTCATTACTGTTGTAATTAATGGTCGCAGAAAATAAGCTGCAAGGAATCCATGAAGTTCTTGTTGATGATGAGAAAGCTGGGGGGGTGAGGGATTTTTTGACATGTTTCAGCTATGAAGGAATTTGATAATTAGCTTGATTGTTctgaaagctt
>TU185405
tgtgagtgtgtttgtgcgctGGGGCTGCACGATGTAGACCAAAAACTCCTACTGTTGTTATTTTATCCCAGAATTATTGGAGCTCCTGATAACAAATGTTGCGATGTGGCCACAGCTGTCTCTACACTGTTTATTTCCCAACGCCTCAAAGCTGACACTCATCAGTAAGTTATTTTATCCGATTTTTCTGCGACATATATTCTGCACAGCACAAGTCTCCCTTGTTGAGCGAGCGCGCTGTTGAAAGTTCTTCttccaaagaaaagaaaaaagatcatGACTTGGTTTAGATTTTGTCACTTATGCAGCCTGTGTGcgtgcttgtttaactatatttgtggggtccaaaaaccgggagtccagtatacctGTGGGTTCCCAACAGCTTTGTgaggccaaaatgctggaccccacgagtttaaagggctgtttgagggttaagacttggttttaggattagggttagaattaggttatggttagggttatggttaaggttaagcatttagttgtgatagtTAGGGTAAgaggctagggaatgcattatgttaatggcgggtccccacaaagatagtgccacaaacgtgtgtgtgtgtgcgtgcgtgtcgtGTAATGTGCGTAGACGATGTCTTAAAGATGCAGTTCCTGTTCCCTAGCAGTGTGTTTATAAGGGAAATGCtgaagtgtgtttgtgcataaaCGGCAAAACTGTGGAGCGCATAAACAAATTCAAGCTTTAATCTGCAAGTCAGGATGGAGGAGTTTTTAGTAGGGCCCCCATTTGAGCGTAAAAACACATTCTAGTTTGCTTCCGTTTGAAAACCTGCTGTCGTTACTTTCCTCCAGCTTTTTGCCAAATGTGATTGGTCAACATACACTTATTTGTCCGTAGCGCACTCAAAACATAGATTACACTCTTACGCTCTTACTAAACCAGCCTCGACTGCTCTCAAAATCCTGACTTTCAGATTGATCACAGCTCAAGTTTGCGATTCACTCATTTTTGTCCCCAACTAACTTAAACAGAGTATTTTTGTGAACttgtccagagagagagagagagagagggggggcaggaGAGTGAAGCAGTTTTCTATCAACTCTGAGAAAAACTGAGAggtctgatttaaaaaaagaaaaaacaaaagaaaggtGACTTGCTACTGTAATCACTGATATACCTCTATCATTACTTACTACTGGTCTCTTGTGTGACCTCACTTACAATTGTGTACGTTATTGTACatataataaaacaaacctGTGCACACGTTCTCCCTTAGGACGAGAGAAGTTTGTTTTcggtttctttttgttttttcaattatGCAAATTTCAGATTTTCTCTCGCATAAATCAGTATTTAGTTTGCTTAAATTCTTGTTTCAAAACCCAGAAATTGTTGCTTATAATGGTATTGGCTggtattcaacaacaaaaatagcATGTTTTGGGTGAAAAGATTATTCCTCGATGCTCCTCAGTAAAAGTCACAAAGGTACAGCATGAAAAGGTTCCACTTATTTAGTCAACTATGGACTTTAAGTACTTGCatttctttcaaaaaaaaaaaaaagtaccataTTTGCTTTCACGTTTTGGTTATTGGTCATGTTTTAAGAGCAGATGTCATTTTTGTTCCCATAACAGACCTTTTTTTGGTTTCTAGTCACTGGTACAGACGGAAACGTTCTCGTTCTGTTCGACTTTTGGCAACAAACTAAAACGACCGCAACCTTTTCTCAagtctcaaactgtgtttttggaATTGATGAGATGAATACAtttcataattaaaaaaaaaaataaaaaatcttacGGAGCTGCAGAAAAGTCTTGAATTTTACAGATATGTTTTGTTGCGGTAAACTCCGACTTGAACTGTTCCTGAAGTGGCCAAGACCCTGTCGTGGCGTGACAATTCTGTGATTATTTATCGTCCTGTTGAGCTCCCCGACTGAACACTGATCCAAAAATCTTTTAACCACTCGGAACGAAAAGAAAGACCCTGAAAAATATCCAGAAGCCACgttttcacattttttaaatttttttttttattaagaccGTATATAGCTCGGCCAATACAGATCCCTCCGGTTTTTCATcgcgagtaaaaaaaaaagtgaatttaaaaACGCTTTTCGAGCACAACTCCTCTTTTGAGTATTACATTGTTTAGACTTCCACAGCCTGAACGTCCTTAAAGGGTTTGACTGCAAACTCAAATGTTCATTACTGTTGTAATTAATGGTCGCAGAAAATAAGCTGCAAGGAATCCATGAAGTTCTTGTTGATGATGAGAAAGCTGGGGGGGTGAGGGATTTTTTGACATGTTTCAGCTATGAAGGAATTTGATAATTAGCTTGATTGTTctgaaagctt
>TU185410
CAACGACAGCATAGAGTACGACGAAGACGAGTGGGGGACTCAGAATGGCTGCACGCCAATAGAAGAAGACTATATCAACGATGACACAGACTCCACCGAGGACTGAAAGATCTATAGAAAGAAATATACATATATCTTTATTATATTTAAGTTAAAAAGAATTCTAAAACACAAACAGCATCTTAATTtgttcttgaaaaaaaaatgtcagggattgtcattctctttttttttttcttgttagtttctttttgattgatttttgaGTTTGGGGTTTTTACTCTAAAAGGGCTTGTGGAAAGAGTAactgctgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtg
>XM_039820702.1
GTGACGTCACTTTACGTCGGAACCAACCAACAGCCTGTGGTGGCAACTGGCAACTTCTGCCGTGTTCTCAAAGCAACTCAATTTCAAAGATATGCTAATAGTTTACAGCAGACTAGACGAGACAGGATTCTGAGGGGAACTTATGTTGTTGGCGGTGACACTCCGGATGGGAGCAACCCGACattaaagagaaaataagaagCAACAGGAGGTTGAGCTGGGCGGACATGGCGGACGGCAGCAGGTTCACGGCTATTAAATAAACGCCAGGCAAAGCCGAAAGCGAGAGGTTGCTGCTGAGggactttaatttattttaatgttgcaCGGATAGCCGGGGCTCCCCAGGACTGTCAGCCCTCCACTGAAGCCTGCATGGCGTCCTCTCAAGCCCGGCTAGGCCAGCAGGCCTTAGCGGTGCTTGATGTGGCTCTGCGAGTTCCCTGTATCTTTATTATCGACGCCATTTTTAACTCTTACTACGACCCTGGTTCGGGATGGGTCGGGGTGATGGGGAAGGTGTTCGTCAGAGTCATGGGTGTCCTCATCTCCAGCATGGTGCTGCTGCTCTCCCAGAAAGCCTTGTTCAAGTTCTACACCCTCTTCTTCGCCGTCCTCCTCGGCATGGCGGCGGTCCTCATCAACTACTACGCCACCTCGCACATAGACTTCTACAGCGCGTACTACAAAGCTGCACTGGGGTTCAGGCTGTTGCCCAGAAACGGGCCGACGCTGTGGCTGGGCATGGCCGCCGTCCAGCTCGTATTCGGCGTGGGCTACGTGTTCCTGCTCAACCTCCAGTCGGTGTTTGCCGCGCTGGTGGTCCTGGACATCATGATCCCTCTGTGGGGGCTGATGATTGAGCTGCCCACCGACGTCCGGCAGCTGCTGGCTGTGTTCTCGGGCCTGGCGCTGGCTCTCAACACGGCCGTGTGTCTGGCCATGCGGCTCAAATGGTTCTACTACTCGTGCCGGTACGTCTACCTGCTCGTGCGGCACATGTACCGGATCTACGGGCTCCAGCTGCTGCTCGAGGACACGTGGAAGAGGATCCGATTCCCTGACGTGCTGCGGGTGTTCTGGCTGACCCGGGTCACCGCCCAGGCGCTGATCCTGGTCTACGTGGTGCGGGCGGTGAGGAGGGAGAGCGGAGACGCCACGGGTGGCGTCGCAGACGGGATCTCCGACTCGCAGGGTTACCTGCTGAGCTGGGACGTGTTCTGGGATCTGACCAGTAACCTGATCATCTCTGGCTGTGACTCTACGCTCACCGTGCTGGGGATGAGTGCTGTTATCTCCTCCGTCGCACACTACCTAGGCCTCAGCATCCTGGCCTTCATAGGTTCGACCGAGGAGGAGGATAAGCGTTTAGGCTTCGTGGCTCCTGTTCTGTTCTTCATCCTGGCTCTGCAGACCGGCCTCAGCAGCCTGAACCCCGAGGAACGCCTGGTCCGCCTGAGCCGGAACATGTGCCTTCTGCTGACGGCCATCCTGCACTTCATCCACGGCATGACGGACCCTGTCCTGATGTCCCTGAGCGCCTCCCACGTCTCCTCCTTTCGCCGCCATTTCCCGGTCCTGCTGGTGTCCCTGGCGCTCTTCGTGCTGCCCGTGGCGCTCAGCTACGCCCTCTGGCACTCCTATGACCTCAACACCTGGCTATTCGCCGTCACCGCCTTCTGCGTGGAGCTCTGCCTCAAGGTGGTGGTGTCCCTGACGGTCTACGGCCTCTTCATGGCGGACGGCCTCTCCAACGTCCTGTGGGAGAAGCTGGACGACTACGTCTACTACGTGCGCTCCACGGGCAACGTCATCGAGTTCCTGTTCGGCGTCATCATGTTCGGTAACGGCGCCTACACCATGATGTTCGAGACGGGCAGCAAGATCCGCGCCTGCATGATGTGCCTGCACGCCTACTTCAACATCTACCTGCAGGCGCGCAACGGCTGGAAGACCTTCATCAACCGCCGCACGGCCGTCAAGAAGATCAACTCCCTGCCGGAGGTCCGCGGCGACCAGCTGAGCGACATCGAGGACGTGTGCGCCATCTGCTACCAGGAGTTCGCCACCTCGGCGCGCATCACGCCCTGCCACCACTACTTTCACGCGCTGTGCCTGAGGAAGTGGCTCTACATCCAGGACACGTGTCCCATGTGCCACCAGAGGGTTTACATCGAGGACGAGAGCCGAGACCGAGCCGCCTTCTCCAACAACAACGGGGACGACGCGGACGCGCGCAGGACGTCGCTCGCCCCGCCGGCGCCCGCCGAGACAACGCACGCGGGCCGGCGCCGCCGAGCCGCGAACGGAGGGCGGCCGCGGCGTCAGGCCGGCAGGACGGGCGCGGAGCTCGACAACGAGCTGCTGGAGGACAACGACAGCATAGAGTACGACGAAGACGAGTGGGGGACTCAGAATGGCTGCACGCCAATAGAAGAAGACTATATCAACGATGACACAGACTCCACCGAGGACTGAAAGATCTATAGAAAGAAATATACATATATCTTTATTATATTTAAGTTAAAAAGAATTCTAAAACACAAACAGCATCTTAATTtgttcttgaaaaaaaaatgtcagggattgtcattctctttttttttttcttgttagtttctttttgattgatttttgaGTTTGGGGTTTTTACTCTAAAAGGGCTTGTGGAAAGAGTAactgctgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttgtgtgtgtgtgcgtgcgagtgtgtgtgtgagtgtgtttgtgcgctGGGGCTGCACGATGTAGACCAAAAACTCCTACTGTTGTTATTTTATCCCAGAATTATTGGAGCTCCTGATAACAAATGTTGCGATGTGGCCACAGCTGTCTCTACACTGTTTATTTCCCAACGCCTCAAAGCTGACACTCATCAGTAAGTTATTTTATCCGATTTTTCTGCGACATATATTCTGCACAGCACAAGTCTCCCTTGTTGAGCGAGCGCGCTGTTGAAAGTTCTTCttccaaagaaaagaaaaaagatcatGACTTGGTTTAGATTTTGTCACTTATGCAGCCTGTGTGcgtgcttgtttaactatatttgtggggtccaaaaaccgggagtccagtatacctGTGGGTTCCCAACAGCTTTGTgaggccaaaatgctggaccccacgagtttaaagggctgtttgagggttaagacttggttttaggattagggttagaattaggttatggttagggtgagggtaagggttaaggttaggcatttagttgtgatggttaaggttagggtaaggggctagggaatgcattttGTCAATGGCAGGTCCCCACAatgatagtgccacaaaccagtgtgtttgcatgtgaggcttgtttaactatatttcgGGGGTCCAataaccgggagtccagtatacttgtggggtcccgacagctttgtggggccaa

Function

symbol description
rnf139 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human RNF139 (ring finger protein 139).

NR:

description
E3 ubiquitin-protein ligase RNF139-like

GO: NA

KEGG:

id description
K15703 RNF139, TRC8; E3 ubiquitin-protein ligase RNF139

RNA

RNA id representative length rna type GC content exon number start site end site
TU185404 False 2391 lncRNA 0.39 2 30587242 30589910
TU185405 False 2385 lncRNA 0.39 2 30587242 30589910
TU185410 False 372 lncRNA 0.37 2 30586858 30658439
XM_039820702.1 True 3451 mRNA 0.55 7 30571463 30587936

Neighbor

gene id symbol gene type direction distance location
tatdn1 tatdn1 coding upstream 1938 30555292 ~ 30569525 (+)
LOC120570731 LOC103376259 coding upstream 22636 30536352 ~ 30548827 (+)
LOC120570853 LOC103356836 coding upstream 304769 30244131 ~ 30266694 (+)
LOC120570896 LOC103146447,LOC105934086,LOC107086112,LOC104962365,LOC106519597 coding upstream 427917 30133220 ~ 30143546 (+)
iffo1a NA coding upstream 441519 30091774 ~ 30129944 (+)
LOC120571534 NA coding downstream 445377 31103816 ~ 31110425 (+)
si:ch211-264f5.6 NA coding downstream 461350 31119789 ~ 31166090 (+)
LOC120571681 NA coding downstream 809686 31468125 ~ 31471167 (+)
LOC120570797 NA coding downstream 1140669 31799108 ~ 31801682 (+)
LOC120571697 ring1 coding downstream 1202506 31860945 ~ 31870388 (+)
LOC120571837 NA non-coding upstream 17760 30550906 ~ 30553703 (+)
LOC120571960 NA non-coding upstream 111310 30459756 ~ 30460153 (+)
G137646 NA non-coding upstream 152745 30400946 ~ 30418718 (+)
G137652 NA non-coding upstream 186578 30384369 ~ 30384885 (+)
LOC120571778 NA non-coding upstream 228958 30337177 ~ 30342505 (+)
G137765 NA non-coding downstream 206285 30864724 ~ 30864997 (+)
G137766 NA non-coding downstream 206670 30865109 ~ 30866120 (+)
G137774 NA non-coding downstream 257628 30916067 ~ 30919751 (+)
G137775 NA non-coding downstream 278586 30937025 ~ 30939985 (+)
G137777 NA non-coding downstream 282922 30941361 ~ 30941841 (+)
LOC120570927 NA other upstream 53573 30516558 ~ 30517890 (+)
G137551 NA other upstream 416348 30151619 ~ 30155115 (+)
LOC120571186 LOC104962270,LOC108242670,LOC106519599,LOC101074355,LOC102221922 other upstream 684317 29857641 ~ 29887146 (+)
LOC120571185 LOC105025867,LOC101068015,LOC100697091,LOC104962269 other upstream 715993 29849803 ~ 29855470 (+)
LOC120571184 LOC104962268 other upstream 723253 29833443 ~ 29848210 (+)
G137743 NA other downstream 87346 30745785 ~ 30747008 (+)
G137773 NA other downstream 262727 30921166 ~ 30936857 (+)
LOC120570800 NA other downstream 959156 31617595 ~ 31683452 (+)
LOC120571558 NA other downstream 1336562 31995001 ~ 32003680 (+)
G138076 NA other downstream 1771971 32430410 ~ 32504976 (+)

Expression


Co-expression Network