LOC120570896 (LOC103146447,LOC105934086,LOC107086112,LOC104962365,LOC106519597)


Basic Information

Item Value
gene id LOC120570896
gene name LOC103146447,LOC105934086,LOC107086112,LOC104962365,LOC106519597
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 30133220 ~ 30143546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819528.1
tttctctgtcagACTCAGATTATCTCCATCATCCTGCCGCTGAGATGTCGACTCCAGAAGCAGCCGGTTCTCCCGGGGGCCCGGAAGGTGAGGGGGGCCCCCCGGCTCCGGCCCCAAATCTAACCAGCAACAGACGACTGCAGCAGACACAAGCACAAGTGGACGAGGTGGTGGACATCATGCGTGTGAACGTGGACAAAGTCCTGGAGAGGGACCAGAAGCTGTCGGAGCTGGACGACCGGGCCGACGCCCTGCAGGCCGGAGCCTCGCAGTTTGAGAGCAGCGCCGCCAAACTCAAGAACAAGTACTGGTGGAAGAACTGCAAGATGATGATCATCATGGCAGTTATAGGCGTTATATGTTGTGGAGTCatcttctTGTATTTCTTCTACTGAGCTGGTCTTCAGGGATGGACGCCACGAGCCGCAGCAGGACGAGTCTCCACCGAGCCAAACACCCAGCCTCTTCTCAGCACTCCTcctgctcttcatcctcctcttccttgcCGATGCCTTCCTTAGAACACCACCATGCTTGGTCTGTGATGTGCTCCATGCAGTGCCTCCTTTTCTTCTCTGCTCCTCTTGGGAAACGTCTCTCCGGGCAGGAATCCTGGGTGGACGTCATATTGTTTGGGTTCCCTGCATCAGGACAGTTTACATCATGAGttgatttaaagtgctcatattatgctttttggcttttcccctttcctttattgtgttatatatcttttttgggTAACGTAATCGgtgta

Function

NR:

description
PREDICTED: vesicle-associated membrane protein 2-like

GO: NA

KEGG:

id description
K13504 VAMP2; vesicle-associated membrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819528.1 True 757 mRNA 0.53 5 30133220 30143546

Neighbor

gene id symbol gene type direction distance location
iffo1a NA coding upstream 3276 30091774 ~ 30129944 (+)
LOC120571888 LOC107086110,LOC104936375,LOC103356842,LOC104962367 coding upstream 43302 30077575 ~ 30089918 (+)
LOC120571887 NA coding upstream 64182 30067195 ~ 30069038 (+)
LOC120570844 LOC102290737,LOC100707037,LOC101469711,LOC103146442 coding upstream 150440 29933415 ~ 29982780 (+)
LOC120570845 NA coding upstream 220738 29888873 ~ 29912482 (+)
LOC120570853 LOC103356836 coding downstream 100585 30244131 ~ 30266694 (+)
LOC120570731 LOC103376259 coding downstream 392806 30536352 ~ 30548827 (+)
tatdn1 tatdn1 coding downstream 411746 30555292 ~ 30569525 (+)
tmem65 tmem65,LOC103374125 coding downstream 447927 30591473 ~ 30635973 (+)
LOC120571534 NA coding downstream 960270 31103816 ~ 31110425 (+)
LOC120570850 NA non-coding upstream 93608 29995188 ~ 30039612 (+)
LOC120570849 NA non-coding upstream 204707 29913995 ~ 29928513 (+)
G137527 NA non-coding upstream 210883 29921568 ~ 29922337 (+)
G137526 NA non-coding upstream 216299 29916717 ~ 29916921 (+)
G137485 NA non-coding upstream 336728 29795932 ~ 29796492 (+)
G137548 NA non-coding downstream 3229 30146775 ~ 30147995 (+)
G137579 NA non-coding downstream 125497 30269043 ~ 30270380 (+)
G137584 ol-gb,LOC101069099,LOC104946927,LOC103356834 non-coding downstream 140654 30284200 ~ 30294784 (+)
G137645 NA non-coding downstream 156531 30300077 ~ 30300406 (+)
LOC120571778 NA non-coding downstream 193631 30337177 ~ 30342505 (+)
LOC120571186 LOC104962270,LOC108242670,LOC106519599,LOC101074355,LOC102221922 other upstream 246074 29857641 ~ 29887146 (+)
LOC120571185 LOC105025867,LOC101068015,LOC100697091,LOC104962269 other upstream 277750 29849803 ~ 29855470 (+)
LOC120571184 LOC104962268 other upstream 285010 29833443 ~ 29848210 (+)
LOC120570925 LOC102307141,LOC101475123,LOC103366049,LOC102237376,LOC103146430,LOC107394395,LOC108242668,LOC102779594 other upstream 932195 29163007 ~ 29201025 (+)
LOC120571364 LOC100710000,LOC101476588,LOC102306017,LOC102215018,LOC103366045 other upstream 1071859 29020235 ~ 29061361 (+)
G137551 NA other downstream 8073 30151619 ~ 30155115 (+)
LOC120570927 NA other downstream 373012 30516558 ~ 30517890 (+)
rnf139 rnf139,LOC106674496 other downstream 427917 30571463 ~ 30658439 (+)
G137743 NA other downstream 602239 30745785 ~ 30747008 (+)
G137773 NA other downstream 777620 30921166 ~ 30936857 (+)

Expression


Co-expression Network