LOC120570844 (LOC102290737,LOC100707037,LOC101469711,LOC103146442)


Basic Information

Item Value
gene id LOC120570844
gene name LOC102290737,LOC100707037,LOC101469711,LOC103146442
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 29933415 ~ 29982780 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819430.1
GTCAGAATATGTgcgagagagtgtgtgtgtgtgtttgtgtgtgggggtcCATGCATGTGTATGTCTCTCCCTGTGTGGCAatgcagcgtgtgtgtgtgcgcgcgagtGTCCTGGCTGGGTATCCAGCGCAGTCCTGGTAATGCTGAGACAGACGTTGAGCGGGTGGGTTTATTTTTGGGACAGTGACAGTGTGTCAATGGCCGCAGATGCGTCGGAAAGGAAGGCTCTGAGATACAAGCAAACCctgCTCTATGGGGAGTACCAAGAAAACCAAGGAGGCTCCGGCAGACGGGAGGCCACACGCCTGCTGACCGAGAGACAGATCAAGAAACATGGCAACCACCCCCGCAGCCATGGCAGGCCACGACATGGCCGGCGTGGCCATGGTCAAAATGGATGCCACAGTCGACATCAGCACGGCTATCACAGCAGACAAAGGAACCGGCATCAGCCTAACATGGAGGCAGAGGCTGACGAGCCAGATGAGCAAACAGCTGACCTCACGTCCTCTATGAAGAAGAAACGCTCCTACTCCAAATGTAGAGACTGTATAGCACGGGTGCAGCGATTCCTTGTGACCAGGTTGGGAGAGGACTGGATCTTCCTTGTTCTGCTGGGCATCACCATGGCGCTGGTCAGCTGGACAATGGACTATGCCAGTGCAAAGAGCCTGCAAGcCTATAAATGGATTTATGGGGAGCTGAGGGGGAACATCCCCCTGCAGTACCTGGCCTGGGTTTCATATCCCCTGATCTTCATCCTGTTCTCCTCCCTCTTCTGTCACCTGGTCGCTCCTCAAGCTATCGGTTCTGGCATCCCAGAGCTGAAGACCATCCTGAGAGGCGTGGTGCTTAAGGAGTATTTAACTCTCAAGGCCTTTGTTGCTAAAGTCATTGGTCTGACTGCTGCCCTGGGCAGCGGCATGCCTGTAGGCAAAGAGGGCCCGTTTGTTCACATCGCCAGTATCTGTGCTGCAGTTCTCCGCAGGTTCATGTCCTGCTTCTCGGGAGCTTATCAGAATCCATACTGTTACACGGACATCCTGACAGTAGGCTGTGCTGTCGGGGTGGGCTGCTGCTTTGGTACTCCACTTGGAGGTGTGCTCTTCAGTATAGAGGTAACATCCACATACTTTGCTGTGAGAAACTACTGGAGAGGATACTTTGCTGCTACGTTTAGTGCCTTCATATTCAGAGTGTTATCAGTGTTCAACAAAGATGCAGTAACCATCACTGCTCTGTTCAGGACAAACTTCCGCATGGATTTCCCTTTTGACCTTCAGGAGCTGCCGGCATTCGCCATCATTGGGATCTCCTGTGGGTTCCTGGGGGCATTCTTCGTCTATCTCAACAGACAGGTGGTGCTGTTCATGAGACGACCCAATGCCATGACCCGCTTCCTGACCAAACACCGGCTGATCTTTCCAGCTGTGGTAACGCTGGTCATCGCCACCTTGACCTTCCCGCCCGGGTTTGGACAGTTCATGGCAGGAGAGCTAATGCCAAGGGAGTGTATCAACTCCCTGTTTGACAACTTTACGTGGACAAAGATTTCGGCATCACCTCCTCCGGCTGGTCTGGGCCTCTCTGCCGCCTGGCTGCACCCTGATGTCAGTGTCTTCCTCGTCCTGCTGCTCTTCTTAATTATGAAGTTCTGGATGTCTGCTGTGGCCACCACCATGCCCATTCCATCTGGGGCTTTCATGCCCGTCTTCATACTAGGAGCTGCATTCGGCAGGCTGGTAGGGGAGATCATGGCCACCCTGTTTCCTCACGGGATCGTGTTTGATGGCATCCTTTACCGCATTATCCCTGGAGGGTACGCAGTCATTGGAGCGGCAGCTTTGACTGGGGCTGTGACTCACACGGTGTCCACAGCGGTTATCTGCTTTGAGTTGACAGGCCAGATCTCCCACATCCTGCCTATGATGGTGGCAGTAATCCTGGCCAACATGGTGGCCCAGGGCCTGCagccctccctgtacgactCCATCATCCAGGTCAAGAAGCTGCCGTACCTGCCGGAGCTCGGCTTTGGACACATGAGTCAGTACAACATCTTTGTGGAAGACATCATGGTGAGAAAGGTGAAGTTTATATCATCTCAGTCCACATACAGAGAGGTTCAACTCCTGCTGGACTCCTCCTCGCTCAGTTCAATCCCTCTGGTCGACTCAAAAGATTCTATGATCCTTCTGGGCAGCATTGACAGATTGGAGCTTCTGGCTCTCTGTGATTGGTGGTTGTCACCAGAGAGAAGGCTCCTGATGCAGAACCAGTCTCAGAAACACAGCTGGGAGTCCTTCGCCTTCatggatgaggaggaagaggaggatggagagaagGGCAGCCCGGTGCTGGAGGAGAGGAACGGCCCGCTGCCTCCTTCAAAGCCTCAGGAGCCCTCCTCAAACCACACTGCTCCTGTTCCTGaAAAAGGTCCTCTGCAGTCTGTGAGGAAAACCCTCAGGAATCTCTTCACCTCAAAAAACAGGCAGACAGAGGGACAGTTGCAGGAGCCCTGTCCGCCTCCCCTGTCGGACACAATGACAACAGAGGAGATCAAAGCGTGGGAGGAGGCAGAGATGGACAAGCCGATGGAAATCGATGAGATACGAGTAGACCCTTCCCCTTTCCAGCTGGTTGAGAGAACATCATTACACAAGacCCACACCTTATTCTCACTGCTGGGGCTCAGTCATGCTTATGTGACCAGCATCGGCAAACTGGTGGGAGTGGTGGCACTGAAAGAGcTCCAGAAAGCCATTGAGGGCTCCACACGCTCTGGTGTCCGGCTCCGTCCTCCGCTCGCCAGCTTTCGGGACATCATCAACCACAACTCTGTTCCTAAACCTCCACCTTCTTCTCCCACTGCTGTTTCCTCTCCGACCTCCTCTCCCTCAGCGCCAACTGCTTCCCAAACTCCGTCCAGACTCCGTCCCAGACtccgtccccccccccctcaaccccacccccaccatcaccaccacgaGAATGAAACGGAGGTATGGATAGAGCGCGTGGCGACGGAGGTGGAggagagcagcagctgcagTGCAGGAAGTGGCGGTGTTAGCAGCAGCTCAGCCAGCAGGAGTTGCAGCTACAACAGCAACCTCACCCTCCCTCTCCCCGCCACTCCTCCCCAGGTCCCTTCTTCCTTCACTCCTTCCTCCTCCAACCTGAGACCCTTACAGAGACTCCTTGAGGGGGAGGAAGACAGTGATGATGAGCCAATGGTTTAGATTAGACAAGAGTGatggttatgtttttataatggaaaacctttttttaatggtgtaagtttttttcttctgttcttAATGTGTTTCTCTGGTCTTTGGACACCCATTTACCTCTTTTTGTCACCACGTAGGTAGAGCAAAGATGTCAATGCTATGTAGAAATGGggggcgatatggaaaaaatctaatatcacaatattgttgaccaaatacctcaatatcgatattgcggcgatattgtagggttggcAATTGGTGCTTACagaaaaacatttacacaatgagatttttgataaataatcatcattaatgtgtatataataactaagtgggtaaaggcaaatagaAAAGCTAGAAGAGTCTGGtaagttaaaaaaattacatccCTTTACTGTAATCTAGCCATTAAAACCAGGGACAGGTAAcaccatattacgatatccaaaatctaagacgatatccagtctcatatcacattatcgatataatattgatatgtattgcccagccctaatgctATGCCAAGCTAgtcataatttcttttttttgaagaCAGTTTATCCCAGCCTTACTGACCCTGTCTGCTCATTTCACAGACCTTTACTTAACCCAACATCTGTCTTTTCTTAATAAGCTCGGTATGTGTGTATGCTTTTTGATACTAGTCCTGCCTCACTTCCTCcttattttttctctttcgtGTTGATTTTCACACAGTCTCTAgggtacatatatatatatactgaagtTGCTTCCAATATCcgctgttttaaatttttatgcCAAAGAATTGACTGTTTCCTTCAGGATTGTTTTCTTGTAATGGGGTAATAGCATCCCAAACAGCATTAAGACAATTATGGCAACTAAAATTTACCATTTAATccctgaaaaataaatgatgtcaTTGCTAATGGCCCCTTACGGCaagaatatatatattgcaCTTTTAGAATAAGAATTAAGAATAAACTTAAACATAATGTACTGCTATAATTTGCACTATCCACTTTGAATTTCGATTGAAGTGAACCCAGTGAACCTCTGCACTGTAGTTCTGCGTTACCTGATTGCGTATGTCTGAAAAAAAGAAGGTTTTTATCGGATGAGAGCAGGAGCTATTGAATTTTTGAACTGGCAACAGACCATCTGGATAACAGAAGACTAATGGAGCTGCTCAGTCCGCTGTGGAAGATTGTCCAAAGCCCCAAAACGACCTCTAAATTGTGTGCTGACCTTGTGAAGGCAGCCTGAGAGCTCATCTCATCACGGTCAAGTTGATAGATGGTGCAGCTAAAGGCGACTGACGACAGCCAAACCCTGCTGTGTCGGTCCTGGACATTGCTTCTCGTTTTCCCCAACATTAATGCCTTCCAGAGTTTTACAAATCACACATGgctacttaaaaaacaaaaatgcattaatgcATTAATTAGCTTACTGAAATGACCTCATTAACAAAACTATTTAATATAGACCTGTCATGATGATTATTGAAGCTGCTCATGTGAGACGTCCTTCTGGCTGCGGCTACAAAGTGTTGATTTTTATTCTAgttcttaaaggtccagtgtgtaacgtgtttagttattcattatcaaaatcggtgttgcccgttcacaaacttgtcctttttcacaAGTATATCaactccaag

Function

NR:

description
PREDICTED: chloride channel protein 1-like

GO: NA

KEGG:

id description
K05010 CLCN1; chloride channel 1, skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819430.1 True 4901 mRNA 0.49 25 29933415 29982780

Neighbor

gene id symbol gene type direction distance location
LOC120570845 NA coding upstream 20933 29888873 ~ 29912482 (+)
LOC120571183 LOC103370324,LOC102309436,LOC102214173 coding upstream 101054 29818666 ~ 29832361 (+)
LOC120570814 cacng8,LOC108242680,LOC106519608,LOC104958027,LOC101473306,LOC100708375 coding upstream 177508 29732913 ~ 29755907 (+)
cacng7a LOC100708651,LOC101075242,LOC101474381,LOC101173155,LOC103370323 coding upstream 214080 29670607 ~ 29719335 (+)
grin2da LOC108242688,LOC102307452,LOC101474831,LOC102206987,LOC103360328 coding upstream 321919 29434728 ~ 29611496 (+)
LOC120571887 NA coding downstream 84415 30067195 ~ 30069038 (+)
LOC120571888 LOC107086110,LOC104936375,LOC103356842,LOC104962367 coding downstream 94795 30077575 ~ 30089918 (+)
iffo1a NA coding downstream 108994 30091774 ~ 30129944 (+)
LOC120570896 LOC103146447,LOC105934086,LOC107086112,LOC104962365,LOC106519597 coding downstream 150440 30133220 ~ 30143546 (+)
LOC120570853 LOC103356836 coding downstream 261351 30244131 ~ 30266694 (+)
LOC120570849 NA non-coding upstream 4902 29913995 ~ 29928513 (+)
G137527 NA non-coding upstream 11078 29921568 ~ 29922337 (+)
G137526 NA non-coding upstream 16494 29916717 ~ 29916921 (+)
G137485 NA non-coding upstream 136923 29795932 ~ 29796492 (+)
LOC120572018 NA non-coding upstream 591085 29340018 ~ 29342330 (+)
LOC120570850 NA non-coding downstream 12408 29995188 ~ 30039612 (+)
G137547 NA non-coding downstream 150175 30132955 ~ 30190325 (+)
G137548 NA non-coding downstream 163995 30146775 ~ 30147995 (+)
G137579 NA non-coding downstream 286263 30269043 ~ 30270380 (+)
G137584 ol-gb,LOC101069099,LOC104946927,LOC103356834 non-coding downstream 301420 30284200 ~ 30294784 (+)
LOC120571186 LOC104962270,LOC108242670,LOC106519599,LOC101074355,LOC102221922 other upstream 46269 29857641 ~ 29887146 (+)
LOC120571185 LOC105025867,LOC101068015,LOC100697091,LOC104962269 other upstream 77945 29849803 ~ 29855470 (+)
LOC120571184 LOC104962268 other upstream 85205 29833443 ~ 29848210 (+)
LOC120570925 LOC102307141,LOC101475123,LOC103366049,LOC102237376,LOC103146430,LOC107394395,LOC108242668,LOC102779594 other upstream 732390 29163007 ~ 29201025 (+)
LOC120571364 LOC100710000,LOC101476588,LOC102306017,LOC102215018,LOC103366045 other upstream 872054 29020235 ~ 29061361 (+)
G137551 NA other downstream 168839 30151619 ~ 30155115 (+)
LOC120570927 NA other downstream 533778 30516558 ~ 30517890 (+)
rnf139 rnf139,LOC106674496 other downstream 588683 30571463 ~ 30658439 (+)
G137743 NA other downstream 763005 30745785 ~ 30747008 (+)
G137773 NA other downstream 938386 30921166 ~ 30936857 (+)

Expression


Co-expression Network