LOC120571697 (ring1)


Basic Information

Item Value
gene id LOC120571697
gene name ring1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 31860945 ~ 31870388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039820763.1
GCGAGTTGTTCcggggagaagaagaagaaagatgtccaccgtagctaacgttagctagcatctGGGGCTCGAAAAATGATGCGCCGTTCATCATTTTGTCGTTTTTTCTCTTCGAGCGAGCCACAGCCATAACTAAAACATCCCTCCGTCGACTGTATAAGAACATAACTACGGGAGTGTGTTATTAGAGTGATTCATAACGTAGTTTttgggaggctgtgtgtgtgtttgtgcaggggggggggtgggggtctcGTCAGGTCAGCTGTCCGTCAGTTAAACGTCAGTGAGAACCAGTCGTCATGGCGGCTCCGGTAAACATCCAGACTCCCAGTAAGACCTGGGAGCTGAGTCTGTATGAGCTTCACAGGAGCCCTCAggAGGCGATCATGGATGGGACGGAGGTGGCGGTGTCTCCCCGCTCTCTGCACAGCGAGCTGATGTGTCCCATCTGTCTGGACATGCTGAAGAACACCATGACAACCAAAGAGTGTCTGCACCGCTTCTGCTCTGACTGTATCGTCACCGCGCTGCGATCCGGGAACAAAGAGTGTCCGACCTGCAGGAAGAAGCTGGTCTCCAGGCGTTCGCTGCGCCGAGACTCCAACTTTGACGCGCTGATCTCCAAGATCTACCCGAGCCGCGATGAGTACGAGGCCCACCAGCGCCGCGTCCTCGAGAGACTCAACAGGCTGCACAACAAGGAGGCGCTGAGCTCCAGCATCGAGGAGGGGCTCCGACAGCAGGCCCGCTACAGGAACCACCGGGTGAAGAAGCCGACTCAGGAGAGCGACAACACCACCTTCAGTGGCGGGGAAGACAACGGCGACGCCCGCTCCCACCTGTCCCATGACTCGGCGCCCTCGCACACCCCTCTACCCGCCGGTCAGACCCCGTCGGAGGCCGGCCCGAGCCGCAAGCGGCCGCGGGCGTCCGAAGACGGCTCGGGGCCCGAGGCGGACAGCGGCAGCCCCACGCCTCCGCTGAGGCGCCACAAAGAGGGGCCGGCCTCGGAGATCGAGCTGGTGTTCAGACCCCACCCGGAGCTGGTCCACGCCGAGGACTACAACCAGACCAGATACGTGAAGACGACCGCCAACGCCACGGTGGACCATCTGTCGAAATACCTTGCTCTGCGCATCGCTCTGGAGGACAGACGGACCAACggagagacagaggacagaggacgagaggagggaggaggaggaggcggaggagaggaaacaggaggagcagcagcaggtggAGAGGGGTCGAGTCTGAGCGCCATCAGTGAGAAACAGTACACCATCTACATCATGACGAGAGGAGGACAGATCTCTACTCTGAACGGCTCTCTGACTCTGGAGTTGGTCAACGAGAAATACTGGAAGGTGAGGAAGCCTCTGGAGCTTTACTACGCTCCCACCAAGGACCAGCCACCGCCGCCGCCACCACCACAGCAACCGCAGCAGAAGTCCCCTCCCCCACAGAGGGAGGGATGAGGGGGAGCGCTGTCCTGCTTTTCTCTCCAACCGCACGTCTTCTTCTGAAGGTGGAAGTTCAGTCTGCAAAATAGAGCTCAACAGCACCCgccaatttgtttttttttttaacggctCAGGTTCCCGGAAGTGTTTATCCCCGTTCGATTGTTCCATTGACgtttttcaaaaataattgCGGGTTGTATAAAGAATTTTACgtctggaaccgagccaaccagaAAGGGAGGAATCATCACCATGACACATTTGATTCAGCAcgaaaaccccccaaaaacattttgaaaacgtaaaaaaaaaaaaggcaaagg

Function

symbol description
ring1 Predicted to enable chromatin binding activity and ubiquitin protein ligase activity. Involved in histone H2A monoubiquitination and negative regulation of transcription, DNA-templated. Located in cytosol and nucleoplasm. Part of PRC1 complex.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RING1 isoform X2

GO: NA

KEGG:

id description
K10695 RNF1_2; E3 ubiquitin-protein ligase RNF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039820763.1 True 1795 mRNA 0.57 7 31860945 31870388

Neighbor

gene id symbol gene type direction distance location
LOC120570797 NA coding upstream 59263 31799108 ~ 31801682 (+)
LOC120571681 NA coding upstream 389778 31468125 ~ 31471167 (+)
si:ch211-264f5.6 NA coding upstream 694855 31119789 ~ 31166090 (+)
LOC120571534 NA coding upstream 750520 31103816 ~ 31110425 (+)
tmem65 tmem65,LOC103374125 coding upstream 1224972 30591473 ~ 30635973 (+)
vps52 vps52 coding downstream 11494 31881882 ~ 31917843 (+)
LOC120571701 NA coding downstream 63604 31933992 ~ 31952193 (+)
atf6b atf6b coding downstream 374606 32244994 ~ 32276565 (+)
LOC120571106 NA coding downstream 477895 32348283 ~ 32398742 (+)
LOC120570932 NA coding downstream 537995 32408383 ~ 32415662 (+)
LOC120570794 NA non-coding upstream 11605 31847055 ~ 31849340 (+)
G137879 NA non-coding upstream 137339 31721804 ~ 31723606 (+)
G137836 NA non-coding upstream 370886 31489860 ~ 31490059 (+)
G137834 NA non-coding upstream 553904 31306827 ~ 31307041 (+)
G137832 NA non-coding upstream 582380 31278145 ~ 31278565 (+)
G137929 LOC103374120 non-coding downstream 73409 31943797 ~ 31948488 (+)
G137952 NA non-coding downstream 229655 32100043 ~ 32100373 (+)
G137953 NA non-coding downstream 232496 32102884 ~ 32103176 (+)
G137956 NA non-coding downstream 237473 32107861 ~ 32128359 (+)
G137970 NA non-coding downstream 274222 32144610 ~ 32145491 (+)
LOC120570800 NA other upstream 177493 31617595 ~ 31683452 (+)
G137773 NA other upstream 924088 30921166 ~ 30936857 (+)
G137743 NA other upstream 1113937 30745785 ~ 30747008 (+)
rnf139 rnf139,LOC106674496 other upstream 1202506 30571463 ~ 30658439 (+)
LOC120570927 NA other upstream 1343055 30516558 ~ 30517890 (+)
LOC120571558 NA other downstream 124613 31995001 ~ 32003680 (+)
G138076 NA other downstream 560022 32430410 ~ 32504976 (+)
LOC120571115 NA other downstream 667889 32538277 ~ 32566162 (+)
G138105 NA other downstream 771253 32641641 ~ 32699309 (+)
G138130 NA other downstream 1113374 32983762 ~ 33020409 (+)

Expression


Co-expression Network