LOC120571676 (LOC103375101)


Basic Information

Item Value
gene id LOC120571676
gene name LOC103375101
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 2584541 ~ 2588952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039820737.1
TCTTTGCACAGTGATTAAGGGGGAGGACCAATGGCAACAAAGGAGACGGAAAGGACGGTAGCTCCTCCTCtcgctatctctctctctctccctctctccctgtgcttTATAGATGCATATAATCCCTGAATTGACCCAGAAAACAAACTCCTCCGACTGCCGAGACGCCGCAGAGTTTGTATCCGCCGCAGGGCTGCATGTAGCCGGAGCATCAGCTGGAGAAACAACCCCGGCATTGATCCAACTTCTCCGTACGGACGGACTCGACATTAATCCATCGGGGTGATAGAGGCCATGGCTGAACACATGATGATGCCCATGACCCACGGCTTCAGGATGGGCATGAACGGACCTCCGCAGCACAACGGCCAGCCCGGCATGCGCACTCTGCCCAACGGCCAGGTGATGCACTACGGCAGGAAccctcagaacagcatggaggCTGCCATGAGACAGAGGCAGGGCATGGTGGGACCCGGCGGGATGGCCGGCCCCGTGAACGGAGTTCCCATGgccaaccaccaccaccagatGATGTCTGGAAACATGATGTACAATGGCCAGGgtccgcagcagcagcaccagcacCACCACATGCacccccagcagcagcagcagcagcagcatcatcatcagcagcagcagcagcagcagcagggtggACACCCACAGCAGTATCTCCCTGGTAACCTCACCTCTCAGCAGCTTATGGCCAGTATGCACCTGCAGAAACTCAACACTCAGTATCACGGACACCCGCTGGTCTCAGCCAACGGCCACCATATGCCCAATGGTGCTCAGTATCGGGTAGGTCCGGCCCAGCTATCAGGCATGCAGCACATCGGCGGCCCTTTGGGACTAAACGGCATGGACATGGATCTGATCGACGAGGAGGTTCTGACTTCACTAGTGCTGGAGCTCGGGTTGGATCGCATTCAGGAGCTGCCCGAGCTCTTCCTGGGACAGAATGAGTTTGACTTCATATCGGACTTTGTGTGCAAACAGCAGCCGAGCACGGTGAGCTGTTGAGTGAAGCGTCCGGAAGGCTTTCGGCTTTGTTTGGACTGGACATCACCCCCCCCAAAGAATGACTGAGCGGTCACAGTAGCACAGCGAGAGGAGACAATCTCTCTGTTCTGTTTGGGTGTTTCTGTGTATTTGACAGTGGCTAGTACACCTTCACACTGACCTACCTGTGAGTTGATAAAGAATTGTGAAGAGAGAAAACGCACCAAAAGCACCAGGTTTCCTTTCTTTGAGCCGGATCTGTCGTCTTTGGTCAAATGGAGGCATCCTGATGCAGCGGGCTCTGTCTGTACCCATCTGGCCCTCAGCACATGTGCCTGCATTGTCAAGGCTTTGGGATAATTGTAAACTTAACAAACACAATGGGGGAAGGCCTGGAAAGACTATCCATCTGGGTCTGCTAGATTCTGTGGCATCCCAAAATCTTTTTAAGTAGCAGGCGTTTTACAAATTTATAAAAGGTAGTCCTCTGAATTTGTTTATACGAGGATGAAGGTATTAAGAACAAGTTGTTGTCTTTCCGACATGCATATTGAAGGCTGGCTCTTCAAAACTGAGTTCctacaaaaaaaatttacacATTTCCTTGAAGAGCAGGAGAGTGAGGTTGTGCAGCATTCCTGGGTGGCGTGATGGGGTTTACCTCGGTTTGGTCGGGGGGGAAATGTGCTACATTGATTCTTCAGCTTTCAGTGTCACTTACCTGACTCCGATTTAAATCTGCAATCATTAAATGTATCGCATCTGTTCCCCCCTCTAGTTAACTGTGATTGAATCATTGCCAAAGTAGCACATTGCTTAGAGCATCGGCTTAAACAAAGCATTTACCCGTAGAAAATGACTCGGAAGTCTCTGTGCTCCGAGAGAGCTAGATGCTCATTGCAAGCACATTTTGGGTTGCTGCTTCGTAGAATTGCGTAGGGAGGGAGAAACGTGATAGTATTGATGAGAAACGCCATGACTCTGGCCTGTTGCAAGATCCaagaaaagccaaaaaaaaaaaaaaacagccatcaGAGGGTGAAG

Function

NR:

description
PREDICTED: cbp/p300-interacting transactivator 3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K21361 CITED2; Cbp/p300-interacting transactivator 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039820737.1 True 2052 mRNA 0.51 2 2584541 2588952

Neighbor

gene id symbol gene type direction distance location
si:dkey-222b8.4 kiaa0895 coding upstream 228355 2330595 ~ 2356186 (+)
LOC120570829 LOC106674472,LOC106537358 coding upstream 285398 2282114 ~ 2299143 (+)
tac1 tac1 coding upstream 368249 2210096 ~ 2216292 (+)
sdhaf3 sdhaf3 coding upstream 490943 2078233 ~ 2093598 (+)
col28a1a LOC103357135,LOC106588681 coding upstream 560036 1971060 ~ 2024505 (+)
LOC120571754 NA coding downstream 203881 2792833 ~ 2794731 (+)
nkiras1 nkiras1,LOC102786732 coding downstream 309023 2897975 ~ 2903198 (+)
LOC120571721 LOC103367584 coding downstream 531942 3120894 ~ 3133756 (+)
pdik1l pdik1l coding downstream 552129 3141081 ~ 3156578 (+)
LOC120570732 NA coding downstream 571770 3160722 ~ 3175316 (+)
G130835 NA non-coding upstream 1957 2582205 ~ 2582584 (+)
G130834 NA non-coding upstream 2426 2581711 ~ 2582115 (+)
LOC120571664 NA non-coding upstream 101185 2479792 ~ 2483356 (+)
LOC120571663 NA non-coding upstream 104811 2477414 ~ 2479730 (+)
G130817 NA non-coding upstream 124146 2451191 ~ 2460395 (+)
G130838 NA non-coding downstream 5722 2594674 ~ 2594908 (+)
G130859 NA non-coding downstream 194853 2783805 ~ 2784065 (+)
LOC120570859 NA non-coding downstream 198468 2787420 ~ 2792006 (+)
G130870 NA non-coding downstream 208367 2797319 ~ 2797623 (+)
G130871 NA non-coding downstream 209990 2798942 ~ 2799159 (+)
G130504 NA other upstream 1713191 870810 ~ 871350 (+)
si:ch211-152p11.4 LOC106593811 other upstream 2202900 353305 ~ 381641 (+)
G130343 LOC107386814 other upstream 2314617 269176 ~ 269924 (+)
sf3a3 sf3a3 other downstream 460073 3049025 ~ 3076057 (+)
LOC120571299 rarb,LOC103362260 other downstream 1004593 3593545 ~ 3826146 (+)
G131253 NA other downstream 1911392 4500344 ~ 4500961 (+)
G131255 NA other downstream 1912116 4501068 ~ 4501732 (+)
G131277 NA other downstream 2000443 4589395 ~ 4599956 (+)

Expression


Co-expression Network