RNA id: XM_039820737.1


Basic Information

Item Value
RNA id XM_039820737.1
length 2052
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC120571676
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 2584541 ~ 2588952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTGCACAGTGATTAAGGGGGAGGACCAATGGCAACAAAGGAGACGGAAAGGACGGTAGCTCCTCCTCtcgctatctctctctctctccctctctccctgtgcttTATAGATGCATATAATCCCTGAATTGACCCAGAAAACAAACTCCTCCGACTGCCGAGACGCCGCAGAGTTTGTATCCGCCGCAGGGCTGCATGTAGCCGGAGCATCAGCTGGAGAAACAACCCCGGCATTGATCCAACTTCTCCGTACGGACGGACTCGACATTAATCCATCGGGGTGATAGAGGCCATGGCTGAACACATGATGATGCCCATGACCCACGGCTTCAGGATGGGCATGAACGGACCTCCGCAGCACAACGGCCAGCCCGGCATGCGCACTCTGCCCAACGGCCAGGTGATGCACTACGGCAGGAAccctcagaacagcatggaggCTGCCATGAGACAGAGGCAGGGCATGGTGGGACCCGGCGGGATGGCCGGCCCCGTGAACGGAGTTCCCATGgccaaccaccaccaccagatGATGTCTGGAAACATGATGTACAATGGCCAGGgtccgcagcagcagcaccagcacCACCACATGCacccccagcagcagcagcagcagcagcatcatcatcagcagcagcagcagcagcagcagggtggACACCCACAGCAGTATCTCCCTGGTAACCTCACCTCTCAGCAGCTTATGGCCAGTATGCACCTGCAGAAACTCAACACTCAGTATCACGGACACCCGCTGGTCTCAGCCAACGGCCACCATATGCCCAATGGTGCTCAGTATCGGGTAGGTCCGGCCCAGCTATCAGGCATGCAGCACATCGGCGGCCCTTTGGGACTAAACGGCATGGACATGGATCTGATCGACGAGGAGGTTCTGACTTCACTAGTGCTGGAGCTCGGGTTGGATCGCATTCAGGAGCTGCCCGAGCTCTTCCTGGGACAGAATGAGTTTGACTTCATATCGGACTTTGTGTGCAAACAGCAGCCGAGCACGGTGAGCTGTTGAGTGAAGCGTCCGGAAGGCTTTCGGCTTTGTTTGGACTGGACATCACCCCCCCCAAAGAATGACTGAGCGGTCACAGTAGCACAGCGAGAGGAGACAATCTCTCTGTTCTGTTTGGGTGTTTCTGTGTATTTGACAGTGGCTAGTACACCTTCACACTGACCTACCTGTGAGTTGATAAAGAATTGTGAAGAGAGAAAACGCACCAAAAGCACCAGGTTTCCTTTCTTTGAGCCGGATCTGTCGTCTTTGGTCAAATGGAGGCATCCTGATGCAGCGGGCTCTGTCTGTACCCATCTGGCCCTCAGCACATGTGCCTGCATTGTCAAGGCTTTGGGATAATTGTAAACTTAACAAACACAATGGGGGAAGGCCTGGAAAGACTATCCATCTGGGTCTGCTAGATTCTGTGGCATCCCAAAATCTTTTTAAGTAGCAGGCGTTTTACAAATTTATAAAAGGTAGTCCTCTGAATTTGTTTATACGAGGATGAAGGTATTAAGAACAAGTTGTTGTCTTTCCGACATGCATATTGAAGGCTGGCTCTTCAAAACTGAGTTCctacaaaaaaaatttacacATTTCCTTGAAGAGCAGGAGAGTGAGGTTGTGCAGCATTCCTGGGTGGCGTGATGGGGTTTACCTCGGTTTGGTCGGGGGGGAAATGTGCTACATTGATTCTTCAGCTTTCAGTGTCACTTACCTGACTCCGATTTAAATCTGCAATCATTAAATGTATCGCATCTGTTCCCCCCTCTAGTTAACTGTGATTGAATCATTGCCAAAGTAGCACATTGCTTAGAGCATCGGCTTAAACAAAGCATTTACCCGTAGAAAATGACTCGGAAGTCTCTGTGCTCCGAGAGAGCTAGATGCTCATTGCAAGCACATTTTGGGTTGCTGCTTCGTAGAATTGCGTAGGGAGGGAGAAACGTGATAGTATTGATGAGAAACGCCATGACTCTGGCCTGTTGCAAGATCCaagaaaagccaaaaaaaaaaaaaaacagccatcaGAGGGTGAAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K21361 CITED2; Cbp/p300-interacting transactivator 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176178 lncRNA upstream 1957 2582205 ~ 2582584 (+) True G130835
TU176177 lncRNA upstream 2426 2581711 ~ 2582115 (+) True G130834
XR_005641258.1 lncRNA upstream 101185 2479792 ~ 2483356 (+) True LOC120571664
XR_005641257.1 lncRNA upstream 104811 2477414 ~ 2479730 (+) True LOC120571663
TU176151 lncRNA upstream 124146 2451191 ~ 2460395 (+) True G130817
TU176182 lncRNA downstream 5722 2594674 ~ 2594908 (+) True G130838
TU176205 lncRNA downstream 194853 2783805 ~ 2784065 (+) True G130859
XR_005641152.1 lncRNA downstream 198468 2787420 ~ 2792006 (+) True LOC120570859
TU176216 lncRNA downstream 208367 2797319 ~ 2797623 (+) True G130870
TU176217 lncRNA downstream 209990 2798942 ~ 2799159 (+) True G130871
XM_039820048.1 mRNA upstream 228355 2330595 ~ 2356186 (+) True si:dkey-222b8.4
XM_039820049.1 mRNA upstream 228355 2330597 ~ 2356186 (+) False si:dkey-222b8.4
XM_039819398.1 mRNA upstream 285398 2282114 ~ 2299143 (+) True LOC120570829
XM_039819399.1 mRNA upstream 285398 2290232 ~ 2299143 (+) False LOC120570829
XM_039819400.1 mRNA upstream 285398 2291336 ~ 2299143 (+) False LOC120570829
XM_039820838.1 mRNA downstream 203881 2792833 ~ 2794731 (+) True LOC120571754
XM_039820898.1 mRNA downstream 309023 2897975 ~ 2903198 (+) False nkiras1
XM_039820900.1 mRNA downstream 309023 2897975 ~ 2903048 (+) False nkiras1
XM_039820899.1 mRNA downstream 309030 2897982 ~ 2903198 (+) True nkiras1
XM_039820902.1 mRNA downstream 471542 3060494 ~ 3076057 (+) True sf3a3
TU175797 other upstream 1713191 870810 ~ 871350 (+) True G130504
XR_005641367.1 other upstream 1915864 668544 ~ 668677 (+) True LOC120572112
XR_005641360.1 other upstream 1916405 667997 ~ 668136 (+) True LOC120572106
XR_005641359.1 other upstream 1917974 666442 ~ 666567 (+) True LOC120572105
XR_005641357.1 other upstream 1918397 666074 ~ 666144 (+) True LOC120572102
TU176696 other downstream 1911392 4500344 ~ 4500961 (+) True G131253
TU176698 other downstream 1912116 4501068 ~ 4501732 (+) True G131255
TU176724 other downstream 2000443 4589395 ~ 4599956 (+) True G131277
TU176855 other downstream 2250884 4839836 ~ 4847497 (+) True s100v2
TU176984 other downstream 2837817 5426769 ~ 5433207 (+) False ppp1r11

Expression Profile