RNA id: XR_005641357.1



Basic Information


Item Value
RNA id XR_005641357.1
length 71
RNA type snoRNA
GC content 0.44
exon number 1
gene id LOC120572102
representative True

Chromosome Information


Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 666074 ~ 666144 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GACTGTCATGATGATTGGCAAAATGTTCAACTGCTCTGAAGTGTGAGTGAAAGCTGCCTCTCTGAACAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU175729 lncRNA upstream 4450 661308 ~ 661624 (+) True G130447
TU175711 lncRNA upstream 22004 641792 ~ 644070 (+) True G130433
TU175714 lncRNA upstream 27500 636883 ~ 638574 (+) True G130435
TU175724 lncRNA upstream 38302 626179 ~ 627772 (+) True G130445
TU175723 lncRNA upstream 41235 624513 ~ 624839 (+) True G130444
TU175763 lncRNA downstream 16703 682847 ~ 683489 (+) True G130478
TU175764 lncRNA downstream 26644 692788 ~ 698967 (+) True G130479
XR_005641271.1 lncRNA downstream 108924 775068 ~ 777997 (+) True LOC120571710
TU175785 lncRNA downstream 111048 777192 ~ 777397 (+) False LOC120571710
TU175804 lncRNA downstream 274333 940477 ~ 940685 (+) True G130510
XM_039819180.1 mRNA upstream 8547 647671 ~ 657527 (+) True chtopa
XM_039820270.1 mRNA upstream 103933 552699 ~ 562141 (+) True ilf2
XM_039820699.1 mRNA upstream 212225 451388 ~ 453849 (+) True LOC120571643
XM_039821051.1 mRNA upstream 284433 353305 ~ 381641 (+) False si:ch211-152p11.4
XM_039821048.1 mRNA upstream 284433 353309 ~ 381641 (+) True si:ch211-152p11.4
XM_039820657.1 mRNA downstream 6989 673133 ~ 677328 (+) True txnipa
XM_039820827.1 mRNA downstream 113369 779513 ~ 807763 (+) True LOC120571743
XM_039820834.1 mRNA downstream 248701 914845 ~ 1162064 (+) True thsd7aa
XM_039821234.1 mRNA downstream 519529 1185673 ~ 1260656 (+) True nxph1
XM_039819814.1 mRNA downstream 1026530 1692674 ~ 1823924 (+) True phf14
XR_005641318.1 other upstream 285453 353306 ~ 380621 (+) False si:ch211-152p11.4
TU175598 other upstream 396150 269176 ~ 269924 (+) True G130343
XR_005641359.1 other downstream 298 666442 ~ 666567 (+) True LOC120572105
XR_005641360.1 other downstream 1853 667997 ~ 668136 (+) True LOC120572106
XR_005641367.1 other downstream 2400 668544 ~ 668677 (+) True LOC120572112
TU175797 other downstream 204666 870810 ~ 871350 (+) True G130504
TU176696 other downstream 3834200 4500344 ~ 4500961 (+) True G131253

Expression Profile