RNA id: XM_039819814.1


Basic Information

Item Value
RNA id XM_039819814.1
length 4880
RNA type mRNA
GC content 0.51
exon number 19
gene id phf14
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 1692674 ~ 1823924 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGAAAAGCTCTACATGTTAGTGGACCGCAGTCTGAAGCGCCGGCAGGTGAAGCCCCTTGCTGCCTCTCTCTTAGATGCCTTGGATTATGACAGCTCAGATGACAGTGACTTTGAAGTGGGAGATGCCTCAGGATCAGAGGGCACAGGCAACGGCAGTGATGAGGAAGGGTCCAAAGCGAGCGCTGCAGGCTCAGAGAGCGACTCGGACAACGCTGGTTCTGCAGACGACGGCATAGATGAAGAGGAGGCCAAAGACCTGGCTGCCAATGACAACTTAACGGAAGATGAAGAGAAGACCAAACAGCAGCCTTCCTCAGACAGCTCCACCAAAGACAGCCTCGCCGTCACCCCGCCCAAAGGCCGACGCAAGAGCAAGAAGGCCCCCGAGGCTGAGCCTGAGCCTGCCGCAGGCGCCGACACTGAGTCCAACTCAGCGCCAGGCGCTGGCAGCGCTAACACGGAAGAGTCTCAGGCCGAGCCCAAGAAATGGAATTTCCGCAGGAACCGCCCCCTGCTGGACTTCACCACTATGGAAGAACTGAACGAGATGGACGACTATGACAGCGAGGACGATAACGACTGGAGACCCACAGCGGGGAAGAAGAAAGGCAAAGCAGCCGCTCAAAAAGGAggagtggaggaagaggagggcgGCAGTGGCAGCGCTAGTGAGGACGACGATAACGACGATGACGATgaggacgacgacgacgacgacgaggatgatgatgatgacgacaaTGCCAAGGAGGATGGTGAtgacaacaacagcagcaccaacaacaacaacaacaacaacagtagcAGTGACAGTGACAAAGAAGTGAAGAAGCCCAAGAAGAAGGCAAAGAGCACCAACGCTTTTGATGAAGAGCTGACGAATGACAGCATGTCCCAGGGAAAGGGCAATGAGGATGCCTTGCTGGACCGATCCCAAACCTGGAGCACTCAGCACATCCTCATCTGCTGCGTCTGTCTGGGAGACAACAGCGAGGATGCAGATGAGATCATCCAATGTGACAACTGTGGGGTGACCGTGCACGAAGGGTGTTACGGCGTGGACGGCGAAAGCGACTCAATCATGAGCTCTGCCTCAGAGAATTCGACAGAGCCTTGGTTCTGTGACGCCTGTAAGAACGGAGTGACTCCCAGCTGTGAGCTGTGCCCCAACCAGGATGGCATCTTCAAAGAGACGGACGCCGGGAGATGGGTGCATGTGGTGTGTGCACTTTACGTTCCCGGTGTTGCATTTGGAGACATCGATAAACTGCGACCAGTGACGCTCACAGAGATGAATTATTCAAAATACGGGGCCAAGGAGTGCAGTTTCTGTGAGGACGCCCGTTTTGCCAGGACGGGTGTGTGCATCAGCTGTGATGCAGGAATGTGTCGCTCCTATTTCCATGTCACCTGTGCACAGAGGGAAGGGCTCCTGTCAGAGGCTGCAGCAGAGGAGGATATTGCTGATCCATTTTTTGCGTACTGCAAACAGCACGCAGACCGCTTTGACAGGAAGTGGAAAAGGAAGAATTATCTGGCCCTCCAGTCCTACTGTAAGGTCTCTgtgcaggagagagagaaacagcttACTCCTGAAGCTCAGGCCCGAATCACTACCCGCCTGCAGCAGTACAGGGCCAAAGCAGAGCTGTCCAGGAACACTCGGCCTCAGGCGTGGGTGCCCCGGGAGAAGCTGCCGCGACCTCTGACCTCCAGTGCCTCAGCCATCAGGAAGCTGATGAGGAAGGCAGAGCTGATGGGCATCAGCACCGACATTTTCCCGGTGGACACGTCTGACGCCAATGCCAGCTTGGACGGACGCAGGAAACACAAGCAGCCCGCCCTCACAGCAGACTTCGTCAACTACTACCTGGAGCGGAACATGCGAATGATCCAGATCCAGGACAACATCTCTGAACAGAAGAACTTAAAAGACAAGCTGGAGAGCGAGCAAGAAAAACTGCACGTGGAGTACAACAAGCTCTGCGAGTCCCTGGAGGAGCTGCTGAATGTGAATGGAGAGCTGCGGAGTGAAGGCCAGGCCATGTGGACTCTGCTGGGGGGCATCCTGGGCCAGAAACTAAACACCCCAGCTGTTCTGAAAGCCCCTAAAGAGAGGAAGCCCAGCAAGAAGGAGGGAGGAACCCCAGGGAAGTCATCCAGCCTGCCAGCAATCCTCTACAGTTGTGGCATCTGTAAGAAGAACCAGGACCAACATCTGCTGGTGTTGTGTGACACCTGCAAGCTCTACTATCACCTGGGCTGCCTGGAGCCACCACTAACACGCATGCCCAAGAAGACCAAGAACAGCTACTGGCAATGCTCCGAGTGTGACCAGGCCAGCAGTGATGAGGCCGATATCGCCATGGAGACGCTACCAGACGGCACCAAGAGGTCCAGGAGGCAGATCAAAGGACCAATCAAATTCATCCCACAGGAGATGTCGCCAGAGCCCAAGAAACATCAAGTGAGCGGCACGAGAACCAGAGggcagaagaggaagagggtTCCCATCTGTGAGGACAGAGAAGATAAAATTGAGGAACCACTGCCACGGGAACGCCGACAACGCCACTCTGCAATGCAGAAAAAACCCAAAGGTGACGACACGAGGACTGAGTGTACAACCTGCAAAGGGCCGGGCGACAACGAAAACCTTgtgagGTGTGATGAGTGCCGGCTCTGCTATCACTTCGGGTGTCTGGACCCCCCGCTGAAGAAATCCCCCAAGCAGACGGGATACGGCTGGATCTGCCAGGAGTGTGATACATCCTCCTCCAAGGAGGAGGACGAAGAAGAGGAGCAGCCGGAGGAAGATGACTCTGttaaagaggaaacggcagagcAGGAGATTCCAAACTGAAGCCGAGCGAGAGGACACAGACCCACCGCTGCTCCGCGGCTTCACCTCCAGTCTTTGCATTTCTGTTCAGACTACAGCACACCTTACTTTCTACTAGCCTCCCAAAGTTTCAGCGGATAGCTTCCACTCCGGATAGTTCAGCAACCAGAGGTGTGTTTTAGAGAAAAAGAACACTATTTAAATGGTGATATCTTTAGATTCAAGGGGTAGAGTTTGTACTTTTTATGAACGAGGCtggacagacggacacacaTCTCTCTGATTTCAGACAACTTCATGAAGCAGCGCATCACAGCATCCAGCCACACGGgcgcacacacagcacagtgcTGCTTCTACAGCAGAGACCGTTACCGCCCAGCCACCTGATGGATTTATGACACGTTCCATGCAATCTATTTTCATACACTAATGATCACTAGACAGTGTTTCCACACAGAGTATCCTCAGCGTCCTGTTTACAAGATGAAGctagcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggggttctTTTCTCTCCGAGTCCACAGAACACTTCTTCTTCCCCCCGCCGAGCACGCTCACACCGCGCTGACTTCACCGGCAAAGTGCTTTCCACCGTCTTCGAACGCATTTCACTCGACATTTGCCtggaggattttattttttatatttcatacaTATCTTCTTACTTCCCCCATTTGAAATATCTACTTATTTTCTCACGTATTTACACTTACAGTATGTGAAGTATTAAGCTTGGTTTTTGTgttgaaaatgaactttttgtAATCATGCAGTATCTTTAAGTGCTACATACCAATCTATTTTGTTATTAGATTTGTATTAAAATCTCCCATGTTTAGGACAAGTGTCTACTCAGAGATTGTATTTACATACCTTGTTCATTTTGGGTTCTTCTTTTGCTCTGGTTCTCTGGCCTGCTAGTAGTCTCCAGAGCTCCCTGGGAGTCATCACTCACTTGTCCGCAAAGTTTAGCAACTGAAAATGTTCACAGCCAGCCCGTCCACACCAacaaccataactataaccataactataacaatGTGAGCGTCCACAATGCTAAAAAAAACGATAACGTTCTGCAAACAGGGACGCCAAGCTCGCACTGCACGCTCctgctgataataatacataatatacaGCAGACGTTGCGACGTATGACTACAGGAATGTCTGTGGTAATATCCTATAGCCTATATTCGTGGATTcaggtagcctacattttaGGAACCAAATAAGTCTACCGGCAGTCCCTGGGGCGCAGAACCCGCTGCCTTTTCCGGGCAACACAGCGCCACATCGAGCGGGCGGGTGTCAGATCTGTATGTGCAGAGCACCGGAACAAAAACACCGACTGTATGATAACAACACCCAAAACAGAAGATTCACTCACAGTGAATCTGAATTATCAGCggtttctgtgacatgagaaataGTTTCAAAGAAGGCTACTGATGTTTAAAAGACACCGAGCTGGAGGATCTTAGCCCCGTAGCGACTGGAAAAGTCCCGCCACTAGTGCACCGTGTGAAAACAAATCTCTCCACCGTGTCTCTCTCCGCCGCGCCATGTTCTAAATTcagatggattctgattggctgtcagcgTTTCTATCGTTCATTAAATTGCTCCGAAAGTGATCCCAACGATATCGTTCTCCCCTGTCGTGGTGTGGACTCGGTCATCCACTGGGGTGAGAACGATTTAAAAAACTATATTTTCATAGTTATCGTTCTAGTTATTGTTCTTGGTGTGGACGGCCCTCACTCTCTCAAATTAGCCACCACATGTAACTTGATACTTATTTTACTCCAGATTAGGAGAAATGTAAGGTTGATTTGAAGTGATGATTACATATAGCGTATGACTGTTATCAGAGAACTAACAAATCAGTAGATTTGACCAGAGACTACTGTCGGGCCAAAACACTGTCACACTCTCACAGTAAATCTGGAATTATCCCTTAAAGTGCCAATAAATTTGAACTGCAAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175945 lncRNA upstream 1381 1690965 ~ 1691293 (+) True G130646
TU175944 lncRNA upstream 2554 1689843 ~ 1690120 (+) True G130645
TU175942 lncRNA upstream 22850 1669624 ~ 1669824 (+) True G130643
TU175938 lncRNA upstream 31095 1661262 ~ 1661579 (+) True G130639
TU175936 lncRNA upstream 35648 1656796 ~ 1657026 (+) True G130637
TU175952 lncRNA downstream 1072 1824996 ~ 1825244 (+) True G130650
TU175955 lncRNA downstream 24357 1848281 ~ 1848487 (+) True G130653
TU175957 lncRNA downstream 33106 1857030 ~ 1861143 (+) True G130655
TU175959 lncRNA downstream 39507 1863431 ~ 1865587 (+) True G130656
TU176029 lncRNA downstream 238086 2062010 ~ 2062234 (+) True G130714
XM_039821234.1 mRNA upstream 432018 1185673 ~ 1260656 (+) True nxph1
XM_039820834.1 mRNA upstream 530610 914845 ~ 1162064 (+) True thsd7aa
XM_039820827.1 mRNA upstream 884911 779513 ~ 807763 (+) True LOC120571743
XM_039820657.1 mRNA upstream 1015346 673133 ~ 677328 (+) True txnipa
XM_039819180.1 mRNA upstream 1035147 647671 ~ 657527 (+) True chtopa
XM_039820989.1 mRNA downstream 108787 1932711 ~ 1945376 (+) True rpa3
XM_039821130.1 mRNA downstream 147136 1971060 ~ 2024505 (+) True col28a1a
XM_039821202.1 mRNA downstream 254309 2078233 ~ 2093598 (+) True sdhaf3
XM_039820391.1 mRNA downstream 386172 2210096 ~ 2216292 (+) True tac1
XM_039819398.1 mRNA downstream 458190 2282114 ~ 2299143 (+) True LOC120570829
TU175797 other upstream 821324 870810 ~ 871350 (+) True G130504
XR_005641367.1 other upstream 1023997 668544 ~ 668677 (+) True LOC120572112
XR_005641360.1 other upstream 1024538 667997 ~ 668136 (+) True LOC120572106
XR_005641359.1 other upstream 1026107 666442 ~ 666567 (+) True LOC120572105
XR_005641357.1 other upstream 1026530 666074 ~ 666144 (+) True LOC120572102
TU176696 other downstream 2676420 4500344 ~ 4500961 (+) True G131253
TU176698 other downstream 2677144 4501068 ~ 4501732 (+) True G131255
TU176724 other downstream 2765471 4589395 ~ 4599956 (+) True G131277
TU176855 other downstream 3015912 4839836 ~ 4847497 (+) True s100v2
TU176984 other downstream 3602845 5426769 ~ 5433207 (+) False ppp1r11

Expression Profile