RNA id: TU175938


Basic Information

Item Value
RNA id TU175938
length 318
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G130639
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 1661262 ~ 1661579 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agctgctggctaaaaagaaccgtaaatacagtaagatcatacttcacgtaggtggtaatggtcgtaaatcgaagatcactaaaatgaatgttgagtcactttgtgcatacgcaaaaacaatgtcggactcagtagttttctctggacccctgccaaacctgaccaatgatgaaatgtacagccgtacgtcatccttccaccgctggttgttggggtggtgcccagctaatgatgtgggctatgtgaataactggagggcgttctggggaaagcctggtctgattgagagagacggcattcatcccacctgggacggtg

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175936 lncRNA upstream 4236 1656796 ~ 1657026 (+) True G130637
TU175933 lncRNA upstream 26844 1633956 ~ 1634418 (+) True G130634
TU175931 lncRNA upstream 31621 1629425 ~ 1629641 (+) True G130633
TU175923 lncRNA upstream 44471 1616314 ~ 1616791 (+) True G130625
TU175922 lncRNA upstream 47067 1613699 ~ 1614195 (+) True G130624
TU175942 lncRNA downstream 8045 1669624 ~ 1669824 (+) True G130643
TU175944 lncRNA downstream 28264 1689843 ~ 1690120 (+) True G130645
TU175945 lncRNA downstream 29386 1690965 ~ 1691293 (+) True G130646
TU175952 lncRNA downstream 163417 1824996 ~ 1825244 (+) True G130650
TU175955 lncRNA downstream 186702 1848281 ~ 1848487 (+) True G130653
XM_039821234.1 mRNA upstream 400606 1185673 ~ 1260656 (+) True nxph1
XM_039820834.1 mRNA upstream 499198 914845 ~ 1162064 (+) True thsd7aa
XM_039820827.1 mRNA upstream 853499 779513 ~ 807763 (+) True LOC120571743
XM_039820657.1 mRNA upstream 983934 673133 ~ 677328 (+) True txnipa
XM_039819180.1 mRNA upstream 1003735 647671 ~ 657527 (+) True chtopa
XM_039819814.1 mRNA downstream 31095 1692674 ~ 1823924 (+) True phf14
XM_039820989.1 mRNA downstream 271132 1932711 ~ 1945376 (+) True rpa3
XM_039821130.1 mRNA downstream 309481 1971060 ~ 2024505 (+) True col28a1a
XM_039821202.1 mRNA downstream 416654 2078233 ~ 2093598 (+) True sdhaf3
XM_039820391.1 mRNA downstream 548517 2210096 ~ 2216292 (+) True tac1
TU175797 other upstream 789912 870810 ~ 871350 (+) True G130504
XR_005641367.1 other upstream 992585 668544 ~ 668677 (+) True LOC120572112
XR_005641360.1 other upstream 993126 667997 ~ 668136 (+) True LOC120572106
XR_005641359.1 other upstream 994695 666442 ~ 666567 (+) True LOC120572105
XR_005641357.1 other upstream 995118 666074 ~ 666144 (+) True LOC120572102
TU176696 other downstream 2838765 4500344 ~ 4500961 (+) True G131253
TU176698 other downstream 2839489 4501068 ~ 4501732 (+) True G131255
TU176724 other downstream 2927816 4589395 ~ 4599956 (+) True G131277
TU176855 other downstream 3178257 4839836 ~ 4847497 (+) True s100v2
TU176984 other downstream 3765190 5426769 ~ 5433207 (+) False ppp1r11

Expression Profile