RNA id: TU175922


Basic Information

Item Value
RNA id TU175922
length 497
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G130624
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 1613699 ~ 1614195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACTGTCTGCctctaaagccctattcgcacgggataagtattacctggtgacctccagtcatttgtaataattgcggaggttgtctgtgatcttaatcctgtGCGAAttggtcatgtctgtaatttgtaaagtaataattcccccgcaaatgatctaccatatttcgccgaaaacggaggtcctgtgataatattagtcccgtgcgaatcggcatctctgctttgtccaggatttggtggggcttttttgttttttcaaggtacctatttccttcttttgcgcctttttatccatctttggcgaagaatggagggtgcgttggagtgttttgacagtgttttgggtgctgggtcatgtcgctatacatcatatacaatttgcagaaagagaaagatgaaaaccaccacaagtgcgagacaaaaagaatgattagatggcgatggatgacatgtatagcagcatgcggtaaatatattttttatgtttgtatcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175921 lncRNA upstream 5005 1608457 ~ 1608694 (+) True G130623
TU175918 lncRNA upstream 9832 1603656 ~ 1603867 (+) True G130620
TU175916 lncRNA upstream 10188 1602857 ~ 1603511 (+) True G130618
TU175914 lncRNA upstream 11537 1601897 ~ 1602162 (+) True G130616
TU175912 lncRNA upstream 26341 1586481 ~ 1587358 (+) True G130614
TU175923 lncRNA downstream 2119 1616314 ~ 1616791 (+) True G130625
TU175931 lncRNA downstream 15230 1629425 ~ 1629641 (+) True G130633
TU175933 lncRNA downstream 19761 1633956 ~ 1634418 (+) True G130634
TU175936 lncRNA downstream 42601 1656796 ~ 1657026 (+) True G130637
TU175938 lncRNA downstream 47067 1661262 ~ 1661579 (+) True G130639
XM_039821234.1 mRNA upstream 353043 1185673 ~ 1260656 (+) True nxph1
XM_039820834.1 mRNA upstream 451635 914845 ~ 1162064 (+) True thsd7aa
XM_039820827.1 mRNA upstream 805936 779513 ~ 807763 (+) True LOC120571743
XM_039820657.1 mRNA upstream 936371 673133 ~ 677328 (+) True txnipa
XM_039819180.1 mRNA upstream 956172 647671 ~ 657527 (+) True chtopa
XM_039819814.1 mRNA downstream 78479 1692674 ~ 1823924 (+) True phf14
XM_039820989.1 mRNA downstream 318516 1932711 ~ 1945376 (+) True rpa3
XM_039821130.1 mRNA downstream 356865 1971060 ~ 2024505 (+) True col28a1a
XM_039821202.1 mRNA downstream 464038 2078233 ~ 2093598 (+) True sdhaf3
XM_039820391.1 mRNA downstream 595901 2210096 ~ 2216292 (+) True tac1
TU175797 other upstream 742349 870810 ~ 871350 (+) True G130504
XR_005641367.1 other upstream 945022 668544 ~ 668677 (+) True LOC120572112
XR_005641360.1 other upstream 945563 667997 ~ 668136 (+) True LOC120572106
XR_005641359.1 other upstream 947132 666442 ~ 666567 (+) True LOC120572105
XR_005641357.1 other upstream 947555 666074 ~ 666144 (+) True LOC120572102
TU176696 other downstream 2886149 4500344 ~ 4500961 (+) True G131253
TU176698 other downstream 2886873 4501068 ~ 4501732 (+) True G131255
TU176724 other downstream 2975200 4589395 ~ 4599956 (+) True G131277
TU176855 other downstream 3225641 4839836 ~ 4847497 (+) True s100v2
TU176984 other downstream 3812574 5426769 ~ 5433207 (+) False ppp1r11

Expression Profile