RNA id: XM_039821051.1


Basic Information

Item Value
RNA id XM_039821051.1
length 2228
RNA type mRNA
GC content 0.50
exon number 5
gene id si:ch211-152p11.4
representative False

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 353305 ~ 381641 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcttcaaTAAGGAGTCTCTGTCCTGACGGACAAGTTGAGACGAGAGAGAAGGTGTGGCGGCGGTCGTGAGGAGGAGACCTATTTGCGACATTTAAGTTCCGAGAGTGGAAACTTTTTGGAACTTTTCCTGATGTCTGTCTTCATTCCGCGTCGCGAGTCTTTGGCCATATGTTAGTGTTGTAGCGAGAGAGGAGCGAGGTCTGAGTCCGTGCGGTGCGGTGCGGTGCGGTGCGGGGGACTGAGCCAGGAACAGATCTGGAGGCAGCAGGAGCGTCGCAGGCTGGATTTCGCTGTCTTTGGTGACCTGAAATCGGCATTGCTGGATCCCAAACCTTCAGGTCATGCTCATGTGGCTCATGCGATTTGGAGGAATCTAACAATGTGCCATGGAGAACGCTTAATAACTGCTGGAGGAAGAGCTACCATGCGCCGATTCAGCTCTGAGGGATCCCTCCTGGATCTTGACTTCCTCCCGTGGAAGAGGGTGGCACTGAAGGACCAAGATAATGGGAAGAACCGGGAGTCTGGCACCTATACACCTCACATGAAGGAAGATGAGCTGGGTGGGGGCTCGGGCTTCCAGACTCCCACCATCCTGGAGCCCAGAGCGAGTCCCACTGAGGCCAGAAAGAAGGGGCCGAAAAAGGAGCACAGCGTCAGTGTGGAGACCCTGAGCGAGCTGGGGAAACAGGACAAGAGCCACCTGGGAGTGTGTGTCATCAGTGGAAGCTGCAGGGCCTACAGCGACGGCCAGCTGGCCCCGGCCAACAAGGGCAGCACGGAGAGCATGGACGATCTGACCCCCTCGTCTCCTTCGTCCTCCGCCAACCCCTTCTCCCTCAAACCTCAGCACAGGCACCAGCATAAAGCCAAGCTGGCTGCCGCTAAACTGCACCTCAAGAGTCTGTTTGGACAGaGTCCTAATTCCTCAAACTCCAACCTATCTAATGCAGACCCGAAAGACGGTGCTAGAGAGAGGAGGTCTCGCCTGGTCTTCATGCGTCAGTGGAGTCAGGTGGGCCACGGTAAGAAGAGGAAGATCAGCCAGGAAGAGCTGGAGAAGTGGGCCGAGTCCCTGAGCGCCCTGCTGGCCAGCCACAGTGAACCTGGACAGCAAGACGCGGGACCTGAGCCTCCAGCTGCTGCAGGCTCCCTCTCACACCTCTCTGGACCACGCTCAGAAACGCATCTACTCGCTCCTGGACACGGACTGTTATCCCCGCTTCCTCCAGTCCAACATCTACCTCTCCTTACTGCGAGAGGATGACTAGCAGCCACACGGGGATCACACACCTGGAGGAACAGTGGCTCAGCTGTTCCCAGGACGTCCTAAACTCTGTAGATCATAAACCTAATATAGAGCTGctgtttgtgtaaaaaaatatatctgaTGCCATTTGGCCACTGTGTGTAGGAAAGTGAGTCAGTTAAGTTAATATATGCTTTCCATTCAGTCTCTGTTTccctctgcttccagtctttatgctaagctaagcatgCCCTGACTCCAGCCCTGTACTAACACAGACATGGTATTGGTATCAATCCTTTTATCCCatttttgaattaaaaaaagaagaaagaaaataagcaaATTTCATCAAATGTTAAACCATTCCTTTATTTGGCTTCTTGTTGGCCCTGggaatttggaaaaacagaggCTAGGCGAGGCAGTTTTGTTTCTGTTACTTTAAATGACCCGTAAAACTACGCAGCTCTCATTTTAACCAATCAACATCCTCCCTGTCAGCAGCTAATGTTCCCATGGTCCACTGCTCGGAGTTCTCTCTGCTGACGGAAAGGAAAAACCCGTTCAGCAAGGATGAGCTCCTTGCAGGAAAAGGTCAAAGTACTATGTGAGTTACTTGTATGGCACAGATGGGAAACCTGAGCAAACTGACTCTGACGGGGCAAATGACTCCGCGACTACAAGGAAGTAGAGCCCAGTCTGCTTCTGAACACTCTGCTCCACTGTTCAAACAAAGACAAACTGGGCATGCATACAATAGCCTTAGAAAACACTCATTTTTCACTCATTTAAGCAGGCTGTGTGTAATGAGTATGTTGAGTATGTTAGCATTTCCTTGACTGTTGGTcctgtaaaaatgaaaacaccCTCATATGAcagaacattttaaagaaacagagaaaataAGTAATAAGTCGTAAGTGTTTGTAATGTTTAAGAGTTTTAAAGAGAAACAAATAAAatccagtttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175606 lncRNA upstream 6764 325884 ~ 346541 (+) True G130348
TU175601 lncRNA upstream 46088 296695 ~ 307217 (+) True G130344
TU175589 lncRNA upstream 112044 241050 ~ 241261 (+) True G130335
TU175573 lncRNA upstream 154520 198427 ~ 198785 (+) True G130321
XR_005641307.1 lncRNA upstream 167404 185485 ~ 185901 (+) True LOC120571819
TU175614 lncRNA downstream 232 381873 ~ 382428 (+) True G130355
TU175620 lncRNA downstream 19799 401440 ~ 406621 (+) True G130359
TU175687 lncRNA downstream 60912 442553 ~ 471901 (+) True G130410
TU175704 lncRNA downstream 158315 539956 ~ 540186 (+) True G130426
TU175705 lncRNA downstream 168177 549818 ~ 550111 (+) True G130427
XM_039821042.1 mRNA upstream 61965 260071 ~ 291340 (+) False c13h6orf136
XM_039821043.1 mRNA upstream 61965 260162 ~ 291340 (+) True c13h6orf136
XM_039821044.1 mRNA upstream 62095 260071 ~ 291210 (+) False c13h6orf136
XM_039821173.1 mRNA upstream 197675 152868 ~ 155630 (+) False LOC120571994
XM_039820699.1 mRNA downstream 69747 451388 ~ 453849 (+) True LOC120571643
XM_039820270.1 mRNA downstream 171058 552699 ~ 562141 (+) True ilf2
XM_039819180.1 mRNA downstream 266030 647671 ~ 657527 (+) True chtopa
XM_039820657.1 mRNA downstream 291492 673133 ~ 677328 (+) True txnipa
XM_039820827.1 mRNA downstream 397872 779513 ~ 807763 (+) True LOC120571743
TU175598 other upstream 83381 269176 ~ 269924 (+) True G130343
XR_005641357.1 other downstream 284433 666074 ~ 666144 (+) True LOC120572102
XR_005641359.1 other downstream 284801 666442 ~ 666567 (+) True LOC120572105
XR_005641360.1 other downstream 286356 667997 ~ 668136 (+) True LOC120572106
XR_005641367.1 other downstream 286903 668544 ~ 668677 (+) True LOC120572112
TU175797 other downstream 489169 870810 ~ 871350 (+) True G130504

Expression Profile