RNA id: TU175620


Basic Information

Item Value
RNA id TU175620
length 374
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G130359
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 401440 ~ 406621 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCTGTACAGGCTGTATCTGGCAACTAGACCCTGTTGGCTACCAGGGAAATGTAACAGCCAACAAGCAGGATGGAAATAAATCCATAACCATACAGAGCAGggtaaaaaagagagagggaagtaGTACAAGAGGGGATGGAAGTTCAAATTTAAAGGACTGGTGCGTCTTATTCTGCAGCGCTCGATTAGAGGGGACTGTGGGCTCTGGTCCCTGTTGCTCCCAGGGGAGGAAGCTGGAGCGGCTCGTGGGGGCGTTCTGCTGGGGGAGGATTCCACGCTGAGGGACTGGGAGCACTGGGAGGATACCGACCGCTGGGGGGAGTGAGGAGGAGCAAACGGCCAGGGACGAGCCCGCTCTTCCTGACGTACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175614 lncRNA upstream 19012 381873 ~ 382428 (+) True G130355
TU175606 lncRNA upstream 54899 325884 ~ 346541 (+) True G130348
TU175601 lncRNA upstream 94223 296695 ~ 307217 (+) True G130344
TU175589 lncRNA upstream 160179 241050 ~ 241261 (+) True G130335
TU175573 lncRNA upstream 202655 198427 ~ 198785 (+) True G130321
TU175687 lncRNA downstream 35932 442553 ~ 471901 (+) True G130410
TU175704 lncRNA downstream 133335 539956 ~ 540186 (+) True G130426
TU175705 lncRNA downstream 143197 549818 ~ 550111 (+) True G130427
TU175713 lncRNA downstream 176445 583066 ~ 589564 (+) True G130434
TU175717 lncRNA downstream 187388 594009 ~ 594332 (+) True G130438
XM_039821051.1 mRNA upstream 19799 353305 ~ 381641 (+) False si:ch211-152p11.4
XM_039821048.1 mRNA upstream 19799 353309 ~ 381641 (+) True si:ch211-152p11.4
XM_039821050.1 mRNA upstream 19799 353309 ~ 381641 (+) False si:ch211-152p11.4
XM_039821047.1 mRNA upstream 19799 353309 ~ 381641 (+) False si:ch211-152p11.4
XM_039821043.1 mRNA upstream 110100 260162 ~ 291340 (+) True c13h6orf136
XM_039820699.1 mRNA downstream 44767 451388 ~ 453849 (+) True LOC120571643
XM_039820270.1 mRNA downstream 146078 552699 ~ 562141 (+) True ilf2
XM_039819180.1 mRNA downstream 241050 647671 ~ 657527 (+) True chtopa
XM_039820657.1 mRNA downstream 266512 673133 ~ 677328 (+) True txnipa
XM_039820827.1 mRNA downstream 372892 779513 ~ 807763 (+) True LOC120571743
XR_005641318.1 other upstream 20819 353306 ~ 380621 (+) False si:ch211-152p11.4
TU175598 other upstream 131516 269176 ~ 269924 (+) True G130343
XR_005641357.1 other downstream 259453 666074 ~ 666144 (+) True LOC120572102
XR_005641359.1 other downstream 259821 666442 ~ 666567 (+) True LOC120572105
XR_005641360.1 other downstream 261376 667997 ~ 668136 (+) True LOC120572106
XR_005641367.1 other downstream 261923 668544 ~ 668677 (+) True LOC120572112
TU175797 other downstream 464189 870810 ~ 871350 (+) True G130504

Expression Profile