fer (fer,LOC102300771,LOC102783831)


Basic Information

Item Value
gene id fer
gene name fer,LOC102300771,LOC102783831
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30002376 ~ 30027881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU199111
gtgtgtgtgtgtctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtctgtctgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcaggataAGATGAAGGACAGGAGTTCTCGGTTTGATACTCTGCGTCATCTGGCCGGAATGATCCGCTCTCCTAAAGCCATGCTGGGCTCCTCCACCTCGCAGTTCTTTGATGTGATCCCGACCTCGGAGCGCCCCCTAGCGGACCAGGACTGGTACCACGGAGCCATCCCCCGCACCGAGGCCCAGGAGTTGCTACGGCAACAGGGAGAGTTCCTGGTCCGGGAGAGTCACGGAAAACCAGGAGAATATGTCCTCTCAGTGTTCTCAGACGATCAGAGGAGACACTTCATCATCCAGTACGCTGATGTaggtacacacaggtacacacaggtaacacacaggtacacacacacacaggtacacacacacacaggtacacacacacacaggtacacacacacaggtacacacacaggtacacacaggtacacacacaggta
>XM_039821918.1
ATGATTCCTACGACTTTGAGCTCTCTGCCATCCCTCCACCTTGTGGTCAGACTGGTCTGCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATCGACGCAGGGCCACAGCTCCGACCTCAGACCACCTCCCCTTGCTATCAGGAGTCGTCATCCACCTGGTGGTCTTCTGTCTGTACTGCATCTCCACTTTCATCATGgataAGATGAAGGACAGGAGTTCTCGGTTTGATACTCTGCGTCATCTGGCCGGAATGATCCGCTCTCCTAAAGCCATGCTGGGCTCCTCCACCTCGCAGTTCTTTGATGTGATCCCGACCTCGGAGCGCCCCCTAGCGGACCAGGACTGGTACCACGGAGCCATCCCCCGCACCGAGGCCCAGGAGTTGCTACGGCAACAGGGAGAGTTCCTGGTCCGGGAGAGTCACGGAAAACCAGGAGAATATGTCCTCTCAGTGTTCTCAGACGATCAGAGGAGACACTTCATCATCCAGTACGCTGATGATAAGAAATGGATCCTGAACCACGAGGACGTGGTGCTGGGGGAGCTGCTGGGAAAGGGTAACTTTGGCGAGGTGTTCAAAGGGACGCTGCAGCGCGACAAAATGGCGGTCGCCGTCAAAACGTGTAAAGAAGATTTACCTCCGGAGCTGAAGATCAGGTTCCTGTCTGAGGCCAGgaTCCTGAAGCAGTACGACCATCCGAACATCGTGAAGCTGATTGGAGTTTGTACGCAGCGACAGCCGATCTACATCGTCATGGAGCTGGTTCCTGgGGGGGACTTCCTGTCCTTCCTCAGGAAGAAGAAGGACGAGCTGAAGACGAAGCAGCTGGTCCGGTTCTCTGTGGACGCGGCGGCCGGCATGGCGTACCTGGAGAGCAAGAACTGCATCCACAGggaCCTAGCAGCCAGGAACTGTCTGGTGGGAGAGGGCAGCGTGCTGAAGATCAGTGATTTTGGGATGAGTCGTCAGGAGGACGACGGCATTTATTCTTCGTCTGGACTCAAGCAGATCCCCATCAAATGGACCGCTCCAGAGGCCCTCAACTATgggcGCTACAGCTCTGACAGTGATGTGTGGAGTTACGGCATCCTGCTGTGGGAGACCTTCAGTCTGGGGGTGTGTCCTTACCCGGGGATGACCAATCAGCAGGCCCGGGAGCAGGTGGAGAAAGGTTACAGGATGGCGTGTCCCCAGCGTTGCCCTGACGACGTGTACAAAGTGATGCAGCGCTGCTGGCAGTATAACCCTGAGGAGCGGCCCAAGTTCTCAGAGCTGCAGCGAGACCTCGCCGCCATCAAGAAGAAGTGATGCATCATGGGGGCGTGGTCGATGACAAACACTAAAACacaccgttagcattagcacgtagctgctactgctgctgcaaacactaaaacacaccgttagcattagcacgtagctgctactgctgctgcaaacactaaaacacaccgttagcattagcacgtagctgctactgctgctgcaaacactaaaacacaccgttagcattagcacgtagctgctactgctgctgcaaaCACTAAAACAGAGGGTTAGCATGTAGCTGCTACTGCAGCTGCAAACACTAAAACacaccgttagcattagcacgtAGCTACTACTAGTGCTGCAAACACTAAAACAGAGGGTTAGCATGtagctgctactgctgctgcaaacactaaaacacaccgttagcattagcatgtagCTGCTGCTGTAAACACTACTGACAGGCGGGCAGACAGAAGCAGAATTTCTCCGTTTTTTGTCTCAGGTTTTAAACCAATGAAAGTAAATCTCTAAATTCTGCAGGTTTTCGTTCTGGATCAGCGCcgaaaaactacaaaaataatcTGTCGGTTGGGTTTGAGTCTGAAAACACTAAGACacaccgttagcattagcatgtagctgctgctgctgtaaacactcagacacaccgttagcattagcatgtagctgctgctgctgtaaacaCTAAGACacaccgttagcattagcacgtAGCTGTAAACGCTACTGACCTCTTCTTCTACCACACTAAACACTAcggtcacaagtttctccccagattttaaaacacattcatgTGAATAAAGTAGAGCTGCTCCTCTTAGTGGATCAGGGGACTAATcgctggttttggtcttagtcagcttagatctctgtagtccattagtcatgtctgatgctgttttcatgctgaatgatttattaccaagaaacgtacgagctcatctctggtaaacacaagaattaaagtggtgctttaacacgactcttagtggagaaactcagatttacagatctgtcgattaaatccaCTAATCGATTAAATCCACTAATCGATTAAATCCACTAATCGATTAAATCCACTAATCGATTAAATCCACTaatcgattaaatcaactaatcgattaaatcCACTAATCGATtaaatcgactaatcgattaaatcgactaatcgattaaatcCACTAATCGATTAAATCCACTAATCGATTAAATCCACTaatcgattaaatcaactaatcgattaaatcCACTaatcgattaaatcaactaatcgattaaatcCACTAATCGATTAAATCCACTAATCGATTAAATCCACTAATCGATTAAATccactaatcgattagtcggtccAGCTGActaagtgttagtcgactaagaactTCTTCAGGCGAGCTCAGCTCTAGGATAAAGCCGTGTGGTTAACGGCGCCGATAATCAGccgtctggcgaggtcggtgactcgagtctgttcggggTGTCCCGTGCCGTCAGCCTTCATTTGGGCAAATCGATTATAccgaactattttagtacaatatgagatcggattCTCCGTCCCGaagtctcttcctgtctctcgTCTCCATGACAACCAACTACTGTAACCATGGCAACAGCTTAAACACTAGAAAGGTTTTCCTGCTGCGGAGGACCAATCAGCCGTCAACActaattgttttaatgtttctcAAAACTGACCTTTATTCTGAAAAACCTGCCTGTcaaacagatttttattttgaaaagccgcCTGTCAAACTGACCTTTATTCTGAAAAACCTGCCTGTCAAACtgacctttattttgaaaagctgcctgtcaaactgacctttattttgaaaagccgcctgtcaaactgacctttattttgaaaagccgcctgtcaaactgacctttattttgaaaacccgCCTGTCAAACTGACCTTTACTTTGAAAAGCCGCCTGTCATCAACAGACCACGCCCCCTCCgaccttttctttgtttttgaccAATCGGGGATTtcggcaaaaaaataaaaagaattcgTATTTAAAGAATTTAAtcattttatcatttattttgttgtttttattattttaaaaccaAAGTTAAAAAATCGTCGGCACTTCCTCAGTTTGTTTCCTGGTTGTCATGGTAACTGaccttttaaaaatataaaaaaaaaaaaaaggattaaaaagtttaatataaatatgtataaacTACAGTTATCTGTGGGAGTGAAGGGTGAGtcctgattggtcagcatcACTTCCGGCCTGTGTGTGGGCGGAGCCTAGAGGTGacctacttcctgtctgtgtgtgggcgGGGCCTAAGTGTCTCCTACTGTTTCCTGTAAATAAACTTTGTTTTACACTAACGGtcttttatattgtttataaaTATCATCGTAGCATTTATTACgaaataaacaaacatacaaacaccaGCGA

Function

symbol description
fer Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Acts upstream of or within blood vessel development and convergent extension involved in gastrulation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in brain; head; intermediate cell mass of mesoderm; and pectoral fin. Orthologous to human FER (FER tyrosine kinase).

NR:

description
PREDICTED: tyrosine-protein kinase Fer isoform X2

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K08889 FER, TYK3; tyrosine-protein kinase Fer

RNA

RNA id representative length rna type GC content exon number start site end site
TU199111 False 915 TUCP 0.52 3 30010635 30012296
XM_039821918.1 True 3770 mRNA 0.46 11 30002376 30027881

Neighbor

gene id symbol gene type direction distance location
LOC120572819 NA coding upstream 48969 29939194 ~ 29953407 (+)
LOC120572923 NA coding upstream 49451 29951149 ~ 29952925 (+)
LOC120572883 NA coding upstream 68278 29911422 ~ 29934098 (+)
LOC120572934 NA coding upstream 118981 29878869 ~ 29883395 (+)
LOC120572888 NA coding upstream 176944 29823219 ~ 29825432 (+)
LOC120572769 LOC101480196,LOC103389327 coding downstream 102451 30130332 ~ 30154540 (+)
LOC120572780 NA coding downstream 130099 30157980 ~ 30172665 (+)
LOC120572877 NA coding downstream 259408 30287289 ~ 30291890 (+)
LOC120572855 NA coding downstream 591135 30619016 ~ 30625059 (+)
LOC120572903 NA coding downstream 665410 30693291 ~ 30696500 (+)
G147396 NA non-coding upstream 7382 29991100 ~ 29994994 (+)
LOC120573008 NA non-coding upstream 37338 29958955 ~ 29965038 (+)
LOC120573035 NA non-coding upstream 63902 29938068 ~ 29938474 (+)
G147387 NA non-coding upstream 84516 29912293 ~ 29917860 (+)
LOC120572980 NA non-coding upstream 91068 29908841 ~ 29911308 (+)
G147394 NA non-coding downstream 1162 30029043 ~ 30029837 (+)
G147399 NA non-coding downstream 13951 30041832 ~ 30042349 (+)
G147393 NA non-coding downstream 22129 30050010 ~ 30051285 (+)
G147401 NA non-coding downstream 32591 30060472 ~ 30067893 (+)
G147403 NA non-coding downstream 33804 30061685 ~ 30121802 (+)
G147348 eif5b other upstream 141484 29745355 ~ 29860892 (+)
G147352 NA other upstream 205244 29750089 ~ 29797132 (+)
LOC120572592 tmub1,LOC105023792 other upstream 306124 29691329 ~ 29696252 (+)
clrn1 clrn1,LOC102780584 other upstream 311531 29675313 ~ 29690845 (+)
G147303 NA other upstream 384224 29573427 ~ 29618152 (+)
prpf4 prpf4,LOC102784297 other downstream 7692 30035573 ~ 30053705 (+)
atp6v1g1 atp6v1g1,LOC103369321,LOC101172700,LOC106512071 other downstream 28704 30056585 ~ 30059161 (+)
LOC120572774 NA other downstream 162312 30190193 ~ 30214405 (+)
LOC120572833 NA other downstream 397708 30425589 ~ 30445428 (+)
G147478 NA other downstream 501011 30528892 ~ 30542509 (+)

Expression


Co-expression Network