RNA id: XM_039821918.1


Basic Information

Item Value
RNA id XM_039821918.1
length 3770
RNA type mRNA
GC content 0.46
exon number 11
gene id fer
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30002376 ~ 30027881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGATTCCTACGACTTTGAGCTCTCTGCCATCCCTCCACCTTGTGGTCAGACTGGTCTGCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATCGACGCAGGGCCACAGCTCCGACCTCAGACCACCTCCCCTTGCTATCAGGAGTCGTCATCCACCTGGTGGTCTTCTGTCTGTACTGCATCTCCACTTTCATCATGgataAGATGAAGGACAGGAGTTCTCGGTTTGATACTCTGCGTCATCTGGCCGGAATGATCCGCTCTCCTAAAGCCATGCTGGGCTCCTCCACCTCGCAGTTCTTTGATGTGATCCCGACCTCGGAGCGCCCCCTAGCGGACCAGGACTGGTACCACGGAGCCATCCCCCGCACCGAGGCCCAGGAGTTGCTACGGCAACAGGGAGAGTTCCTGGTCCGGGAGAGTCACGGAAAACCAGGAGAATATGTCCTCTCAGTGTTCTCAGACGATCAGAGGAGACACTTCATCATCCAGTACGCTGATGATAAGAAATGGATCCTGAACCACGAGGACGTGGTGCTGGGGGAGCTGCTGGGAAAGGGTAACTTTGGCGAGGTGTTCAAAGGGACGCTGCAGCGCGACAAAATGGCGGTCGCCGTCAAAACGTGTAAAGAAGATTTACCTCCGGAGCTGAAGATCAGGTTCCTGTCTGAGGCCAGgaTCCTGAAGCAGTACGACCATCCGAACATCGTGAAGCTGATTGGAGTTTGTACGCAGCGACAGCCGATCTACATCGTCATGGAGCTGGTTCCTGgGGGGGACTTCCTGTCCTTCCTCAGGAAGAAGAAGGACGAGCTGAAGACGAAGCAGCTGGTCCGGTTCTCTGTGGACGCGGCGGCCGGCATGGCGTACCTGGAGAGCAAGAACTGCATCCACAGggaCCTAGCAGCCAGGAACTGTCTGGTGGGAGAGGGCAGCGTGCTGAAGATCAGTGATTTTGGGATGAGTCGTCAGGAGGACGACGGCATTTATTCTTCGTCTGGACTCAAGCAGATCCCCATCAAATGGACCGCTCCAGAGGCCCTCAACTATgggcGCTACAGCTCTGACAGTGATGTGTGGAGTTACGGCATCCTGCTGTGGGAGACCTTCAGTCTGGGGGTGTGTCCTTACCCGGGGATGACCAATCAGCAGGCCCGGGAGCAGGTGGAGAAAGGTTACAGGATGGCGTGTCCCCAGCGTTGCCCTGACGACGTGTACAAAGTGATGCAGCGCTGCTGGCAGTATAACCCTGAGGAGCGGCCCAAGTTCTCAGAGCTGCAGCGAGACCTCGCCGCCATCAAGAAGAAGTGATGCATCATGGGGGCGTGGTCGATGACAAACACTAAAACacaccgttagcattagcacgtagctgctactgctgctgcaaacactaaaacacaccgttagcattagcacgtagctgctactgctgctgcaaacactaaaacacaccgttagcattagcacgtagctgctactgctgctgcaaacactaaaacacaccgttagcattagcacgtagctgctactgctgctgcaaaCACTAAAACAGAGGGTTAGCATGTAGCTGCTACTGCAGCTGCAAACACTAAAACacaccgttagcattagcacgtAGCTACTACTAGTGCTGCAAACACTAAAACAGAGGGTTAGCATGtagctgctactgctgctgcaaacactaaaacacaccgttagcattagcatgtagCTGCTGCTGTAAACACTACTGACAGGCGGGCAGACAGAAGCAGAATTTCTCCGTTTTTTGTCTCAGGTTTTAAACCAATGAAAGTAAATCTCTAAATTCTGCAGGTTTTCGTTCTGGATCAGCGCcgaaaaactacaaaaataatcTGTCGGTTGGGTTTGAGTCTGAAAACACTAAGACacaccgttagcattagcatgtagctgctgctgctgtaaacactcagacacaccgttagcattagcatgtagctgctgctgctgtaaacaCTAAGACacaccgttagcattagcacgtAGCTGTAAACGCTACTGACCTCTTCTTCTACCACACTAAACACTAcggtcacaagtttctccccagattttaaaacacattcatgTGAATAAAGTAGAGCTGCTCCTCTTAGTGGATCAGGGGACTAATcgctggttttggtcttagtcagcttagatctctgtagtccattagtcatgtctgatgctgttttcatgctgaatgatttattaccaagaaacgtacgagctcatctctggtaaacacaagaattaaagtggtgctttaacacgactcttagtggagaaactcagatttacagatctgtcgattaaatccaCTAATCGATTAAATCCACTAATCGATTAAATCCACTAATCGATTAAATCCACTAATCGATTAAATCCACTaatcgattaaatcaactaatcgattaaatcCACTAATCGATtaaatcgactaatcgattaaatcgactaatcgattaaatcCACTAATCGATTAAATCCACTAATCGATTAAATCCACTaatcgattaaatcaactaatcgattaaatcCACTaatcgattaaatcaactaatcgattaaatcCACTAATCGATTAAATCCACTAATCGATTAAATCCACTAATCGATTAAATccactaatcgattagtcggtccAGCTGActaagtgttagtcgactaagaactTCTTCAGGCGAGCTCAGCTCTAGGATAAAGCCGTGTGGTTAACGGCGCCGATAATCAGccgtctggcgaggtcggtgactcgagtctgttcggggTGTCCCGTGCCGTCAGCCTTCATTTGGGCAAATCGATTATAccgaactattttagtacaatatgagatcggattCTCCGTCCCGaagtctcttcctgtctctcgTCTCCATGACAACCAACTACTGTAACCATGGCAACAGCTTAAACACTAGAAAGGTTTTCCTGCTGCGGAGGACCAATCAGCCGTCAACActaattgttttaatgtttctcAAAACTGACCTTTATTCTGAAAAACCTGCCTGTcaaacagatttttattttgaaaagccgcCTGTCAAACTGACCTTTATTCTGAAAAACCTGCCTGTCAAACtgacctttattttgaaaagctgcctgtcaaactgacctttattttgaaaagccgcctgtcaaactgacctttattttgaaaagccgcctgtcaaactgacctttattttgaaaacccgCCTGTCAAACTGACCTTTACTTTGAAAAGCCGCCTGTCATCAACAGACCACGCCCCCTCCgaccttttctttgtttttgaccAATCGGGGATTtcggcaaaaaaataaaaagaattcgTATTTAAAGAATTTAAtcattttatcatttattttgttgtttttattattttaaaaccaAAGTTAAAAAATCGTCGGCACTTCCTCAGTTTGTTTCCTGGTTGTCATGGTAACTGaccttttaaaaatataaaaaaaaaaaaaaggattaaaaagtttaatataaatatgtataaacTACAGTTATCTGTGGGAGTGAAGGGTGAGtcctgattggtcagcatcACTTCCGGCCTGTGTGTGGGCGGAGCCTAGAGGTGacctacttcctgtctgtgtgtgggcgGGGCCTAAGTGTCTCCTACTGTTTCCTGTAAATAAACTTTGTTTTACACTAACGGtcttttatattgtttataaaTATCATCGTAGCATTTATTACgaaataaacaaacatacaaacaccaGCGA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K08889 FER, TYK3; tyrosine-protein kinase Fer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199102 lncRNA upstream 540 29922755 ~ 30001836 (+) False LOC120572948
TU199115 lncRNA upstream 7382 29991100 ~ 29994994 (+) True G147396
XR_005641582.1 lncRNA upstream 37338 29958955 ~ 29965038 (+) True LOC120573008
XR_005641609.1 lncRNA upstream 63902 29938068 ~ 29938474 (+) True LOC120573035
TU199094 lncRNA upstream 84516 29912293 ~ 29917860 (+) True G147387
TU199113 lncRNA downstream 1162 30029043 ~ 30029837 (+) True G147394
TU199118 lncRNA downstream 13951 30041832 ~ 30042349 (+) True G147399
TU199107 lncRNA downstream 20611 30048492 ~ 30053705 (+) False prpf4
TU199112 lncRNA downstream 22129 30050010 ~ 30051285 (+) True G147393
TU199119 lncRNA downstream 28707 30056588 ~ 30058540 (+) False atp6v1g1
XM_039822281.1 mRNA upstream 48969 29939194 ~ 29953407 (+) False LOC120572819
XM_039822446.1 mRNA upstream 49451 29951149 ~ 29952925 (+) True LOC120572923
XM_039822282.1 mRNA upstream 51797 29939194 ~ 29950579 (+) True LOC120572819
XM_039822398.1 mRNA upstream 68278 29911422 ~ 29934098 (+) True LOC120572883
XM_039822466.1 mRNA upstream 118981 29878869 ~ 29883395 (+) True LOC120572934
XM_039821920.1 mRNA downstream 7979 30035860 ~ 30053704 (+) True prpf4
XM_039822472.1 mRNA downstream 28704 30056585 ~ 30059161 (+) True atp6v1g1
XM_039822197.1 mRNA downstream 102451 30130332 ~ 30154540 (+) True LOC120572769
XM_039822198.1 mRNA downstream 102451 30130332 ~ 30154540 (+) False LOC120572769
XM_039822213.1 mRNA downstream 130099 30157980 ~ 30172665 (+) True LOC120572780
TU199068 other upstream 63903 29928827 ~ 29938473 (+) False G147371
TU199012 other upstream 141484 29748766 ~ 29860892 (+) False G147348
TU199023 other upstream 205244 29750089 ~ 29797132 (+) True G147352
TU198992 other upstream 306626 29691826 ~ 29695750 (+) False LOC120572592
TU198920 other upstream 321903 29675313 ~ 29680473 (+) True clrn1
TU199110 other downstream 7692 30035573 ~ 30043707 (+) False prpf4
TU199109 other downstream 8019 30035900 ~ 30043707 (+) False prpf4
TU199247 other downstream 513060 30540941 ~ 30542509 (+) True G147478
TU199299 other downstream 842903 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 965551 30993432 ~ 30993503 (+) True trnag-ucc_10

Expression Profile