RNA id: TU199247


Basic Information

Item Value
RNA id TU199247
length 394
RNA type TUCP
GC content 0.52
exon number 3
gene id G147478
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30528892 ~ 30542509 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATCACCAACAGGTACGATGGCACGAACATCTCTGCAATGGCTGATCTttctgacCTCACTGCTGAGCAGCACCACAAACCAAGtctctctgactgggAGTCCCAGCAGCTCTCAGACGTTTGAaggacagtctgtctctctgagctgtgaggaggacgacagctctgctggatggactctgaggaggaacacaAACAGAGAAACCAGGACTCAGTGTGGACCTGACTGGGGAAGACCTACTGGTTTCTCCTGTATCATCAGCTACATGGACCCAGTGGAGAGTGGAGTttactggtgtgagtccagagagggagcggccagtaacagcatcaacatcactgtcactggtaagtacattttcaggattatttccggatgtccctcaccttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199246 lncRNA upstream 11592 30528892 ~ 30529349 (+) False G147478
XR_005641613.1 lncRNA upstream 26638 30511952 ~ 30514303 (+) True LOC120573040
XR_005641515.1 lncRNA upstream 55018 30482416 ~ 30485923 (+) True LOC120572953
TU199222 lncRNA upstream 87119 30451636 ~ 30453822 (+) True G147462
TU199215 lncRNA upstream 95513 30440861 ~ 30445428 (+) False LOC120572833
TU199282 lncRNA downstream 192338 30734847 ~ 30768337 (+) True LOC120572899
TU199284 lncRNA downstream 192338 30734847 ~ 30735460 (+) False LOC120572899
TU199310 lncRNA downstream 300491 30843000 ~ 30844794 (+) True G147526
XR_005641621.1 lncRNA downstream 372211 30914720 ~ 30915488 (+) True LOC120573047
XR_005641531.1 lncRNA downstream 375949 30918458 ~ 30925702 (+) False LOC120572963
XM_039822312.1 mRNA upstream 95886 30425589 ~ 30445055 (+) False LOC120572833
XM_039822311.1 mRNA upstream 95886 30425610 ~ 30445055 (+) False LOC120572833
XM_039822310.1 mRNA upstream 95886 30425672 ~ 30445055 (+) False LOC120572833
XM_039822308.1 mRNA upstream 95887 30425649 ~ 30445054 (+) False LOC120572833
XM_039822309.1 mRNA upstream 95887 30426204 ~ 30445054 (+) True LOC120572833
XM_039822354.1 mRNA downstream 76507 30619016 ~ 30623315 (+) False LOC120572855
XM_039822355.1 mRNA downstream 76518 30619027 ~ 30625059 (+) True LOC120572855
XM_039822420.1 mRNA downstream 150782 30693291 ~ 30696500 (+) True LOC120572903
XM_039822264.1 mRNA downstream 158748 30701257 ~ 30708322 (+) True LOC120572809
XM_039822415.1 mRNA downstream 206649 30749158 ~ 30750507 (+) False LOC120572899
TU199110 other upstream 497234 30035573 ~ 30043707 (+) False prpf4
TU199109 other upstream 497234 30035900 ~ 30043707 (+) False prpf4
TU199111 other upstream 528645 30010635 ~ 30012296 (+) False fer
TU199070 other upstream 538440 29948919 ~ 30002501 (+) False G147371
TU199068 other upstream 602468 29928827 ~ 29938473 (+) False G147371
TU199299 other downstream 328275 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 450923 30993432 ~ 30993503 (+) True trnag-ucc_10
unassigned_transcript_714 other downstream 452030 30994539 ~ 30994609 (+) True trnas-aga_10
TU199831 other downstream 542101 31084610 ~ 31089077 (+) False LOC120572605
XR_005641510.1 other downstream 573981 31116490 ~ 31117987 (+) False LOC120572908

Expression Profile