RNA id: XM_039822310.1


Basic Information

Item Value
RNA id XM_039822310.1
length 1770
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC120572833
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30425589 ~ 30445428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTACTGCATGCTTTTAGAATGTTTTTAGAGATACTCTGCAGAGTGGCCTCCTTGAATAATTAATTATATCAAGTTATTCATAAATAGAGAAATCCACAACAGCTGTTTTTAAGTTGGCTGAACCACACTAGCGTGGGAGTTTAGCCGGCTTCAGTCTAGAGAGCTGATATGCTAAGTTTCTGTTTGAACACAGTTCACCGACATCGATGACCGTGTCAGCTggactaccaaaataagacaaaacaccaaaaccataacagatGGATGACCCTCCACTTCACGTTCAGACAGCTTCTTTTCAGATCAGTTCAGAAGTGATGCTCTCTGGTGACAGCGGTGATGTCATTCTCATATTCATCATCCAATCCCTCCTCAGCCTGGGTGGGCAAGgtcatcaccatggcaacagcctctctgactgtgagtccCAGCAGATCTCAGATGTTTAGaggacagtctgtctctctgagctgtgaggaggacgacagctctgctggatggactctgaggaggaacacaACCGGAGACACCGGGACCAGGAAGTGTGTCGACTGGGGAGGAAAACCTGCTGGTTCTTCCTGTAAAATCAGCTACATGGTCCCAGGGGACAGTGGAGTttactggtgtgagtccagagagggagcaaccagtaacagcatcaacatcactgtcactggtggaccagtgatcctgcagagtcctgtcctccctgtgatggagggagaagacctcactctgacctgtaaaacGAAGAGGTCCTCCAACCTCCCAGctggtttctataaagatggctccttcatcaggactgagcctgcaggtcacatgaccatccaccatgtttccaggtctgatgaaggcctctacaagtgcaacatcagcagtgttggagagtctccacccagctgggtctctgtcacagttctgacCTCACTGCTGAGCAGCACAACAAACCAAGATATTCACCTGACAGCTGATTCTCTCTACAGAGAAACCAAAGACAACAAGAGCTTCTTTGAGCTCTCTGCCACGCTACCTCCTTGTGTCCAGACTGGTCTACCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTGTTTATATCGACGCAGGACCACAGGGAAATTCCTGCCTGTTGTCATGGTAATGACCCCGCCCACCCGTACTGAGGAGGGAATGGATGACGACTATGATGATGTCATGACTGCTGTCACCACCGAATATCAGTTCTGAACTGATCTTAAAAATAAGCTCAAATGTATAGAGTCCATAATGTCTCTGTACATCAGATACATATCGCCTCCTGAATTCTAGCTGCCCAGCGACTCAGATTCTCCACTGTTACAACAGGAAGCCCTTCATGACCACCAGTCCCTAGGCCGTATGCGAAATGTATTTTGCTCAGTCCCTGCCTATTCCACTGTTCTTCAGTTTCCCAAATATTTACCTTCGAGTCCCCCCTTCGGACCCGTTCCGTCCACCCAGATCCAGTTGGACTCTTGTAACTTTTGGAACGTTTGAAATCCATCCCTTTAAAGGTGcggtaggtaggattgtgaagatccaggacttagtcAAAAAATGTAACATCAAACACTTCTCCGTCCCTCCCCTCTTTCCACTAAAGCCCCAAACtttctcctaagcccctcccaccacaagggagaatgaatgcgtgtgtatgagcagtgattgacacgcagttagacacccccccccctggccctgattggtgcatctaaaCAGGGAGTGGTGgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641625.1 lncRNA upstream 9878 30412987 ~ 30415794 (+) True LOC120573054
TU199180 lncRNA upstream 69376 30266373 ~ 30356296 (+) True G147436
XR_005641612.1 lncRNA upstream 153650 30270601 ~ 30272022 (+) True LOC120573039
XR_005641599.1 lncRNA upstream 177614 30244475 ~ 30248058 (+) True LOC120573025
TU199168 lncRNA upstream 231976 30190223 ~ 30193696 (+) False LOC120572774
TU199222 lncRNA downstream 6581 30451636 ~ 30453822 (+) True G147462
XR_005641515.1 lncRNA downstream 37361 30482416 ~ 30485923 (+) True LOC120572953
XR_005641613.1 lncRNA downstream 66897 30511952 ~ 30514303 (+) True LOC120573040
TU199246 lncRNA downstream 83837 30528892 ~ 30529349 (+) False G147478
TU199282 lncRNA downstream 289792 30734847 ~ 30768337 (+) True LOC120572899
XM_039822385.1 mRNA upstream 133782 30287289 ~ 30291890 (+) True LOC120572877
XM_039822204.1 mRNA upstream 211267 30190193 ~ 30214405 (+) False LOC120572774
XM_039822354.1 mRNA downstream 173961 30619016 ~ 30623315 (+) False LOC120572855
XM_039822355.1 mRNA downstream 173972 30619027 ~ 30625059 (+) True LOC120572855
XM_039822420.1 mRNA downstream 248236 30693291 ~ 30696500 (+) True LOC120572903
XM_039822264.1 mRNA downstream 256202 30701257 ~ 30708322 (+) True LOC120572809
XM_039822415.1 mRNA downstream 304103 30749158 ~ 30750507 (+) False LOC120572899
TU199110 other upstream 381965 30035573 ~ 30043707 (+) False prpf4
TU199109 other upstream 381965 30035900 ~ 30043707 (+) False prpf4
TU199111 other upstream 413376 30010635 ~ 30012296 (+) False fer
TU199070 other upstream 423171 29948919 ~ 30002501 (+) False G147371
TU199068 other upstream 487199 29928827 ~ 29938473 (+) False G147371
TU199247 other downstream 95886 30540941 ~ 30542509 (+) True G147478
TU199299 other downstream 425729 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 548377 30993432 ~ 30993503 (+) True trnag-ucc_10
unassigned_transcript_714 other downstream 549484 30994539 ~ 30994609 (+) True trnas-aga_10
TU199831 other downstream 639555 31084610 ~ 31089077 (+) False LOC120572605

Expression Profile