RNA id: XM_039822415.1


Basic Information

Item Value
RNA id XM_039822415.1
length 669
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC120572899
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30734847 ~ 30768337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTAGAGGTTGCCTTCTGGGTTCCATGTTCATTCTCACCATGCCATCAACAGCAGCAGTGTGTCTCCTGCTGCTCTGGCCAGTGGCCTCAGGCACTGCAGCTGATGacCTGACTGTGGTAACAGCGCATCCTGGAGATGATGTCATTCTGCCATGTCAGGCCAATGATTCCTCCATCATAGCTGTAGAGTGGACCAGACCTGACCTGGAGCCACCAAAGTACGTCCTCTATTGCAGCGATGGACACTGTGATCCAACCCACCAGCATCCATCCTTTAAGGACAGGGTGGACCTGGTGGACAGAGATCTGAAGGACGGAGACGTGTCTTTAATTCTGAAGAATGTGAGCAGCAACGACAATGGGACATACGAGTGTCGAGTTAAACTAGATAGTTCAAGACGGAAAAAGAGAGCCATCATCGACTCTGAGCCAATCAGAACCATCCGTCTGCAGGTTCAAAACTCCTCTCCTGTAGGCCGATACCATGGACTGGCAGCAGGTGTTCCAGTTGGACTGATTCTTGTAGCTGTTGCAGTGGTTGGTGTCCTGATGTATAAAAGACATAAGAACAAGAGATCAGGACAAcctgctgctgatgatgatgatgatgaagcatTGGGCGATACGCTAGTCTGACAACTCACAGAGCTCTTTACAACAGACAGTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199284 lncRNA upstream 13698 30734847 ~ 30735460 (+) False LOC120572899
TU199246 lncRNA upstream 219809 30528892 ~ 30529349 (+) False G147478
XR_005641613.1 lncRNA upstream 234855 30511952 ~ 30514303 (+) True LOC120573040
XR_005641515.1 lncRNA upstream 263235 30482416 ~ 30485923 (+) True LOC120572953
TU199222 lncRNA upstream 295336 30451636 ~ 30453822 (+) True G147462
TU199310 lncRNA downstream 92493 30843000 ~ 30844794 (+) True G147526
XR_005641621.1 lncRNA downstream 164213 30914720 ~ 30915488 (+) True LOC120573047
XR_005641531.1 lncRNA downstream 167951 30918458 ~ 30925702 (+) False LOC120572963
XR_005641530.1 lncRNA downstream 168967 30919474 ~ 30926500 (+) True LOC120572963
XR_005641529.1 lncRNA downstream 168967 30919474 ~ 30925702 (+) False LOC120572963
XM_039822264.1 mRNA upstream 40836 30701257 ~ 30708322 (+) True LOC120572809
XM_039822420.1 mRNA upstream 52658 30693291 ~ 30696500 (+) True LOC120572903
XM_039822355.1 mRNA upstream 124099 30619027 ~ 30625059 (+) True LOC120572855
XM_039822354.1 mRNA upstream 125843 30619016 ~ 30623315 (+) False LOC120572855
XM_039822309.1 mRNA upstream 304104 30426204 ~ 30445054 (+) True LOC120572833
XM_039821923.1 mRNA downstream 725 30751232 ~ 30754016 (+) True LOC120572602
XM_039822421.1 mRNA downstream 37109 30787616 ~ 30794921 (+) True LOC120572904
XM_039822422.1 mRNA downstream 37109 30787616 ~ 30794921 (+) False LOC120572904
XM_039822427.1 mRNA downstream 139520 30890027 ~ 30894606 (+) False LOC120572907
XM_039822426.1 mRNA downstream 141230 30891737 ~ 30894606 (+) True LOC120572907
TU199247 other upstream 206649 30540941 ~ 30542509 (+) True G147478
TU199110 other upstream 705451 30035573 ~ 30043707 (+) False prpf4
TU199109 other upstream 705451 30035900 ~ 30043707 (+) False prpf4
TU199111 other upstream 736862 30010635 ~ 30012296 (+) False fer
TU199070 other upstream 746657 29948919 ~ 30002501 (+) False G147371
TU199299 other downstream 120277 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 242925 30993432 ~ 30993503 (+) True trnag-ucc_10
unassigned_transcript_714 other downstream 244032 30994539 ~ 30994609 (+) True trnas-aga_10
TU199831 other downstream 334103 31084610 ~ 31089077 (+) False LOC120572605
XR_005641510.1 other downstream 365983 31116490 ~ 31117987 (+) False LOC120572908

Expression Profile