RNA id: XM_039822421.1


Basic Information

Item Value
RNA id XM_039822421.1
length 4336
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC120572904
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30787616 ~ 30794921 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTACAGCATCTATTACCTACAGCAGCGTCTCTTGTCCTCATGGCTGGATTCAGAtgtgctttatttacattattatgGATATTTTCTGTGGCTGGAGAAGTTCTGGTTGGAGGCAATCTGCATTTCACtatctttgtacttgtacactacacaatgacaataaagACCCACAACAGTTGATAGTGAAGCCTGGACAGGACGTCACTCTTCAGTGTCAGGCTCCCAGAGATGCTGACATCAGTAGGTTGACTTGGAGCAGACCTGACCTGGGGTCAGATTATGTCTTCTTCTTCAGAGATGGCCGCATGTATGTAAACTACCAGCATCCATCATATCACGGTAGAGTGCAGCTGAGTGTTCCCGAGATGAAGGACGGAAATGTTTCTATTGTTCTGAAGAACGTCAGCGCCAACGACACCGGGACGTACCAGTGTCGAATTTTAATCAGTGGGGGAGACGGACCTGAACTCATCAACACCACCACCCTGAATGTCACAGACTCAGGTCACACAGATGGACGCACCGGGGTAGGAAGAGACACTGATGGAGGAGACAAGGATGGAGGAAGCAAGAATGGAGGAAGCAAGGATTTAAGATTTGCGAATGGTCTggaattgttgttgttattgttgttttattgtttgatTAATCCTTAAAACACGTAAAAGTAAGTGGAAGGGCTTTTTCATATTCATAGTCCAAGCTAGAGTGAGAGATGCCCTGCCCTGTAATCAGACACAACATAATGGTATTGAATGTGGTTTGAAGCATATTTTAGCTTTgcacctcccccccccactaTCTTAGTCATAAGCGGTGCTTTATGAATCCTGCGGAGGCTGCAGGCAGAGCGTTCTCCATCACCTACATAAGTAACCTGAAGTTTATACGTTTACTTTTGCGTTGGTTAGTGCGTCGATCTcattaagagaatagcaggccctgcatatgtgtgtgtgtgtgtgtgtggctggtaGAGTGACTGAGAAAGTGACTGTGATTATCTTTAgagtgagtagcgactctagagtcatcgtgagagaaacaaagagtctcccctgttctttctgaccacagtgggaaatgtggagaaggaaaagttaaccctctccttgatttcatgttgtttatggggaaggagaaccaggaaatgagtcggcaGTGCTaacaagccacggccgagagacgctCGTAGCTGCGTCATTTTTTGACAGGTGCACgccaggctacggcgtagggtcagtatctccacgtacctacgtatgTAACCACAGAGTAGATTTAACTTCAAGCAGTGCTTGCTGCGTTGGCAGGTAGAAACCGACtgaaggtgctgacacaccacAGAGACCGCCAGACGTCGGTCCAAGTTGGGCCTCGGCCAAccagtgtttaaatgtgtttgcgTCAATGGGTGACTTGTGACTCTGGTGTGTAAAATGCTTTGAGTCATCGTTTACACAAGAAAAGCAGTATTTAAATGGATAAACATAATTCATCTTCATCTCACCTGATCATTCTAATACACATAGAGCTGTCAAAACTGGCCAAAcatgatgttaaaatgtttttttctaaaagaCCACAGATGTTCGAACTATCTATCTAATCTATTTTTCACATTACGTGCATGAGGGCAAGCGTACAACGACATGCATAACTACTTATAcgtatatttatttcaacataaacatgCCTTTTAAAGatctacattattattatttgaaatCTCTTTCTCTGCACCGTGGTTGGTTCTACTGAGATAACAAGAAATATTACTGTAACGCTCTCCTTTTCGGATTTCCTCACAAATCCCTGGGACTGAAGCATAGggtctgtgctgctgctgatcTGGGCAAATGTGGTTTAGTTAAAGCTATTCTAGTAATGGGTTATATATTACTTACGCTTGCTGGCATGAAATATGTAGGTTagctttttgtgacattttaataaACTTTGAACAACGAcctacagtagcctatatatttgGGGTAAATGATCACATTTGACAACATTGCAGCAGTCAGTAGATAAAGTACAGGAAACTGCATGCAGAAGACTTCATAAAATACCATAGAACACATGTTGTCTTATGATATTTCAACAGCGTGGCAGCAACAGTTATTTCCTCttaatgtccacagtgttagcatggttagcattgttaagcctctgtcctgattgacaggtccatagtttactaaatgaacatcatgctattattgaagaagacttgaaactagcgattgagatcATAAAGTCACTATGAACATGTTTACTGAgctggagccagtggagtcgcggtggagccagtggagtcgccccctgctggaagttagagagaatgcagttTGTAGGAGCttcagcattggcttcacttttatACTTGGGAGTAACttttatttatgtgtatgtTATGTTTATGGAGTATTGGCGgataaaattatgttttttcataGACAATGTCACAGACGTATGCCATTAATTGGAATGGGCCCTCACCTCTCCGACACCCAGTGGCCCATTGGCTGATATTTGGGTGAGTGTATACTACTGGTTGGCGtttatattttcaaaaaatcTTTGTACCCAACTTGAATGCTACCTGTAATGTGTTGGATGAAGCTACAAGCTGGAACATGTTGGCATGTAGCAGCTATTGTTTCTGTGCATTTATGTTCTCGAtaatgttgtaaatgttttgttttgtgactttaaaaaGGCAAGGAGATTTgctcaaaaatatttttttttaccgtttttttttttttgttcatgggACGTTAGTGATGATAACATTACTATCAGGCAGTTTGGTAGTTTCCAGAGAAGGAAGCTTTCTGTTTCTGTTATAcatgattaatgtgtgtttatttgatTGTTATCAGAGTGTACTGAAGTGAAACAGCTCAGCCAGCTACAGAGAAGGGGGTTTCTGGGGGTGAAAACGACACAGCAGATCTAGCTCAGTAATTCAGTTTAAACATAACCAGCTTCAATGGAACTAGTTCTTACTCATTGCCCTGAGTCAGACATGAACTAATGCCTTAAATATCTGTCTGGTTAGGCCAGTGTGTTCAAACCTAACCCCCCTAATCTTTTAAGTATATGTTTGTCTATGAGCAGCAGCTGcacaattctttttttattgacctttatttattcagggaaagTCCACTGAGATGCAGCCGTTGATAACATTCACAGTTTACCATTcgtacctggaagctgcccagcacAAACACAGTCTGATCACTGAGCAGctggttggggttaagggccttgctcaagggcacctcagcgATGGTTATAAGGGATTTAAATATTAACCGTCTGGCTGTTAAAACACAGGATGTTGTTCCTGGATTATTTGCCTGTTTTACAACTTCTCGCTGGCTGAGTTACACTGAACAAAGAACCCTAATTTACCTAAATCAGCAATCTATCTGAAAATCTATCTGTGATAGAATGAATAGCTTTCTGGTTCAAAAGTGAACCTTTTTTCACCAACTGTTTGAGGAAGTTGATTAAACGTTGACATATAGCCAACATTTTCCCAGGATTtgcaatatttacattttttatcctgtacaaagtaataaataagtaaataataaCCTATAGCAATTTTGAAACCTAACTAAGAAACCAAATCCACATTTCTCGGGTAAATATCAGTAAATCTGTTTCCAATTAAATTACAAAGAAAACCATGTAACACAGGCTTCAATACATCTGTATTAATTAAGAAAcaatttaaatatcacaatgaacacatttgcaatgaaatacaaataaaaactaaaatacaacTCACAACTCAACAAATGATGGAAATGATTGATTTGACACAATGCTTTAAACACAATTTGAAAGTAGTAGTTGTCAGGACGGTTGTTGTTGATCTCTGGAgtgattgacagaaaaaaaacagacaggttTTAGTTCAGTGGCTTCCACTCAAATGTTATTCAGTAGAAAACTGCTTATTAAGCAGATAAGGCAGGATGAGTTCAGGTACAACAGGAGAggaagcagcagccatctttacTGAGCAGTTTGGTTATTCATATTTAATTCCAGTACTTCTTTTCTGCCCCACTATTTGCGTTCTTGCTACGCactttgtatgtttgtttgtctttttttactttttacatagGCCTAGGTAGTCATTTTGGGGTTCCTAATACTTAACTGTGTGTGTTGATCTCTCTGTGTACAGCTTCATGTCTGATTCTGTCTTCCTGTAGACTGTGTGTACCATTGAGAGTCAGATTCTGACCACTggttaaaaataattataataatagtaaaaGCATCCAATCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199282 lncRNA upstream 19279 30734847 ~ 30768337 (+) True LOC120572899
TU199284 lncRNA upstream 52156 30734847 ~ 30735460 (+) False LOC120572899
TU199246 lncRNA upstream 258267 30528892 ~ 30529349 (+) False G147478
XR_005641613.1 lncRNA upstream 273313 30511952 ~ 30514303 (+) True LOC120573040
XR_005641515.1 lncRNA upstream 301693 30482416 ~ 30485923 (+) True LOC120572953
TU199310 lncRNA downstream 48079 30843000 ~ 30844794 (+) True G147526
XR_005641621.1 lncRNA downstream 119799 30914720 ~ 30915488 (+) True LOC120573047
XR_005641531.1 lncRNA downstream 123537 30918458 ~ 30925702 (+) False LOC120572963
XR_005641530.1 lncRNA downstream 124553 30919474 ~ 30926500 (+) True LOC120572963
XR_005641529.1 lncRNA downstream 124553 30919474 ~ 30925702 (+) False LOC120572963
XM_039821923.1 mRNA upstream 33600 30751232 ~ 30754016 (+) True LOC120572602
XM_039822415.1 mRNA upstream 37109 30749158 ~ 30750507 (+) False LOC120572899
XM_039822264.1 mRNA upstream 79294 30701257 ~ 30708322 (+) True LOC120572809
XM_039822420.1 mRNA upstream 91116 30693291 ~ 30696500 (+) True LOC120572903
XM_039822355.1 mRNA upstream 162557 30619027 ~ 30625059 (+) True LOC120572855
XM_039822427.1 mRNA downstream 95106 30890027 ~ 30894606 (+) False LOC120572907
XM_039822426.1 mRNA downstream 96816 30891737 ~ 30894606 (+) True LOC120572907
XM_039822174.1 mRNA downstream 209520 31004441 ~ 31015708 (+) True LOC120572756
XM_039822175.1 mRNA downstream 209520 31004441 ~ 31015708 (+) False LOC120572756
XM_039822176.1 mRNA downstream 209520 31004441 ~ 31015708 (+) False LOC120572756
TU199247 other upstream 245107 30540941 ~ 30542509 (+) True G147478
TU199110 other upstream 743909 30035573 ~ 30043707 (+) False prpf4
TU199109 other upstream 743909 30035900 ~ 30043707 (+) False prpf4
TU199111 other upstream 775320 30010635 ~ 30012296 (+) False fer
TU199070 other upstream 785115 29948919 ~ 30002501 (+) False G147371
TU199299 other downstream 75863 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 198511 30993432 ~ 30993503 (+) True trnag-ucc_10
unassigned_transcript_714 other downstream 199618 30994539 ~ 30994609 (+) True trnas-aga_10
TU199831 other downstream 289689 31084610 ~ 31089077 (+) False LOC120572605
XR_005641510.1 other downstream 321569 31116490 ~ 31117987 (+) False LOC120572908

Expression Profile