RNA id: TU199070


Basic Information

Item Value
RNA id TU199070
length 643
RNA type TUCP
GC content 0.53
exon number 4
gene id G147371
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29819999 ~ 30002501 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGcctctctgactgtgagtcccagcagctctcagatgtttgaaggacagtctgtctctctgagctgtgaggaggacgacagctctgctggatggactctgaggaggaacacGACCAGAGAAACCAGGACTCAGTGTGGAGATGGCTGGGGAAGACCTGCTGGTTCTTCCTGTAACATCAGCTACATGGACCCAGTGGACAGTGGAGTttactggtgtgagtccagagagggagcaaccagtaacatcatcaccatcactgtcactggtggaccagtgatcctgcagagtcctgtcctccctgtgatggagggagaagacctcactctgacctgtaaaacaaagacgtcctccaacctcccagctggtttctataaagatggctccttcatcaggactgagcctgcaggtcacatgaccatccaccatgttaccaggtctgatgaaggcctctacaagtgtctcatcagcagtgttggagagtctccatccagctgggtctctgtcacagAGAATCCTATGATTCCTACGACTTTGAGCTCTCTGCCATCCCTCCACCTTGTGGTCAGACTGGTCTGCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATCGACGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641609.1 lncRNA upstream 10445 29938068 ~ 29938474 (+) True LOC120573035
TU199094 lncRNA upstream 31059 29912293 ~ 29917860 (+) True G147387
XR_005641553.1 lncRNA upstream 37611 29908841 ~ 29911308 (+) True LOC120572980
TU199018 lncRNA upstream 70339 29872424 ~ 29878580 (+) True G147349
TU199021 lncRNA upstream 70905 29876238 ~ 29878014 (+) True G147350
TU199113 lncRNA downstream 26542 30029043 ~ 30029837 (+) True G147394
TU199118 lncRNA downstream 39331 30041832 ~ 30042349 (+) True G147399
TU199107 lncRNA downstream 45991 30048492 ~ 30053705 (+) False prpf4
TU199112 lncRNA downstream 47509 30050010 ~ 30051285 (+) True G147393
TU199119 lncRNA downstream 54087 30056588 ~ 30058540 (+) False atp6v1g1
XM_039822398.1 mRNA upstream 14821 29911422 ~ 29934098 (+) True LOC120572883
XM_039822466.1 mRNA upstream 65524 29878869 ~ 29883395 (+) True LOC120572934
XM_039822403.1 mRNA upstream 123487 29823219 ~ 29825432 (+) True LOC120572888
XM_039822180.1 mRNA upstream 209731 29717852 ~ 29739188 (+) True LOC120572760
XM_039821914.1 mRNA upstream 252919 29691329 ~ 29696000 (+) True LOC120572592
XM_039821920.1 mRNA downstream 33359 30035860 ~ 30053704 (+) True prpf4
XM_039822472.1 mRNA downstream 54084 30056585 ~ 30059161 (+) True atp6v1g1
XM_039822197.1 mRNA downstream 127831 30130332 ~ 30154540 (+) True LOC120572769
XM_039822198.1 mRNA downstream 127831 30130332 ~ 30154540 (+) False LOC120572769
XM_039822213.1 mRNA downstream 155479 30157980 ~ 30172665 (+) True LOC120572780
TU199068 other upstream 10446 29928827 ~ 29938473 (+) False G147371
TU199012 other upstream 88027 29748766 ~ 29860892 (+) False G147348
TU199023 other upstream 151787 29750089 ~ 29797132 (+) True G147352
TU198992 other upstream 253169 29691826 ~ 29695750 (+) False LOC120572592
TU198920 other upstream 268446 29675313 ~ 29680473 (+) True clrn1
TU199111 other downstream 8134 30010635 ~ 30012296 (+) False fer
TU199110 other downstream 33072 30035573 ~ 30043707 (+) False prpf4
TU199109 other downstream 33399 30035900 ~ 30043707 (+) False prpf4
TU199247 other downstream 538440 30540941 ~ 30542509 (+) True G147478
TU199299 other downstream 868283 30870784 ~ 30872888 (+) True G147518

Expression Profile