RNA id: XM_039821914.1


Basic Information

Item Value
RNA id XM_039821914.1
length 870
RNA type mRNA
GC content 0.69
exon number 3
gene id LOC120572592
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29691329 ~ 29696252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcCGGCTGCTGCTATGATAACCTACCCGGCCTGACGGTGAAACCATCGCTGCAGCCTGATTGGATGGCGTGGGCGCCGCACCGCTACACGGCACCTCGCGGTTATTCGTGGTCGCTTCGGCGCGCGGTGCCGTGTTGCGTACCAACTGTACCCCACGCTACCTGTTTATGaaggtggtgtttgtgtgtaaccAGGTGGAGTGACGCTGTGagctaagccccgcccccctgTGTGTTGCCGGGGGCGATGGCGCTGATCGAAGGCGTGGGAGACGAGGTGACTCTGCTGTTCGgctcgctgctgctgctcgcCGTGATGCTGCTGGCCTGGATCTCCACCCGCACGGCCGAGCCGCCGAGCACCTGTTCACCACAGGCCCGCCCCTGCCGGCGCCGGACCGCCGCCACGCGGCCGCCCGGCTGTGGCGCCCGCGCGCGCCGAGACGGAGGCTCCGCCCACAGGGCCGAGCGCGGGCGGGCCGAGcgccggccggtgaccggaggAGAGAGGAACATGGTGCTCCGACTCAAGTTCCTCAACGACACCGAGACCACGGCTCAGGTCAAACCACAGGACACCATCGGCTACATCAAACGGACCTATTTTTCGGGCCGGGAGCAGCAGGTGCGTCTGATCTACCAGGGCCAGCTGCTGCAGGACGACGGCCAGACTCTGGCGTCTCTGAACCTCGCCCATAACTGCGTCCTGCACTGCCACATCTCGGCGGTGTGCGTGGCGCGGGGGCGGGGCGGGGGCGGGCCACGCCAGCCGCCCCCGCGGCCGACCCCCGGTGCAGGCCGCGTGGGTCGGAGTCACCATCTTCCTCAGCCTCGCTGCCTGAGGCACCGCCTCACGCCTAgccagctctga

Function

GO: NA

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198925 lncRNA upstream 10452 29676686 ~ 29680877 (+) True G147305
TU198979 lncRNA upstream 40389 29648230 ~ 29650940 (+) True G147329
TU198919 lncRNA upstream 57670 29632524 ~ 29633659 (+) True G147300
TU198918 lncRNA upstream 57670 29633236 ~ 29633659 (+) False G147300
TU198953 lncRNA upstream 68685 29622152 ~ 29622644 (+) True G147318
TU198971 lncRNA downstream 346 29696346 ~ 29696823 (+) True G147323
TU198973 lncRNA downstream 346 29696346 ~ 29696823 (+) False G147323
TU198995 lncRNA downstream 1161 29697161 ~ 29698852 (+) True G147342
TU198977 lncRNA downstream 12007 29708007 ~ 29708526 (+) True G147327
TU199004 lncRNA downstream 18774 29714774 ~ 29715454 (+) True G147344
XM_039821913.1 mRNA upstream 484 29675313 ~ 29690845 (+) False clrn1
XM_039822441.1 mRNA upstream 171070 29516852 ~ 29520259 (+) True LOC120572920
XM_039822442.1 mRNA upstream 171070 29516897 ~ 29520259 (+) False LOC120572920
XM_039822379.1 mRNA upstream 283064 29385915 ~ 29408265 (+) True LOC120572872
XM_039822436.1 mRNA upstream 333889 29356226 ~ 29357440 (+) True LOC120572916
XM_039822180.1 mRNA downstream 21852 29717852 ~ 29739188 (+) True LOC120572760
XM_039822403.1 mRNA downstream 127219 29823219 ~ 29825432 (+) True LOC120572888
XM_039822466.1 mRNA downstream 182869 29878869 ~ 29883395 (+) True LOC120572934
XM_039822398.1 mRNA downstream 215422 29911422 ~ 29934098 (+) True LOC120572883
XM_039822281.1 mRNA downstream 243194 29939194 ~ 29953407 (+) False LOC120572819
TU198920 other upstream 10856 29675313 ~ 29680473 (+) True clrn1
TU198923 other upstream 73177 29573427 ~ 29618152 (+) True G147303
TU198769 other upstream 210842 29269414 ~ 29480487 (+) True G147192
TU198771 other upstream 269530 29414312 ~ 29421799 (+) True LOC120572956
TU198572 other upstream 625820 29029482 ~ 29065509 (+) False G147035
TU199012 other downstream 52766 29748766 ~ 29860892 (+) False G147348
TU199023 other downstream 54089 29750089 ~ 29797132 (+) True G147352
TU199068 other downstream 232827 29928827 ~ 29938473 (+) False G147371
TU199070 other downstream 252919 29948919 ~ 30002501 (+) False G147371
TU199111 other downstream 314635 30010635 ~ 30012296 (+) False fer

Expression Profile