RNA id: TU198979


Basic Information

Item Value
RNA id TU198979
length 705
lncRNA type inter_gene
GC content 0.59
exon number 3
gene id G147329
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29648230 ~ 29650940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGCAGTGTTCTGACTGGTTGTTTACCTGTCAGCAGGTGTTAGCAGTGTGCCGACTGGATGTTTACCTGTCAGCAGGTGTTAGCAGTGTGACTGGTTGTTTACCTGTGGGCGGTCTCTTGCGGTTCTCGCTCTGACCAGGTGAGGTTTTGGCGTTTCCGTTGTGGATCTCGTTGCTCCGACGGGCGCTGCTCCGGCTCCCGGAGCGCGGCGGAGCTTTACCTGCAGACGAGGTGGCCTTCACTGGAGGGGGCGTGGCCTTCTTACCCGACGACTTGGAGGCTGAAGAGGTTTTCCCTGCGGAGGCAGCAGTGCTGTTCTTGGGCGTGGCCTGTTGAGCTTTGGGCGTGGCCTGTTGACCTTTGGGTGTGGTCTGTTGACCTTTGGGTGTGGCCTGTTGACCTTTGGGCGTGGCCTGTTGACTCTTGCCTTTAGGGGGCGGGGCCTGTTGAGATTTGCCTTTAGGGGGCGGGGCCGGGCTCTTCTTGGTGCTCACtacttcctcttcttcctcttccgactcctcttcttcctctgactcctcctcttcctcttctgactcctcctcctcctcctcctcctgttctccatctccctcctcttcttcttcctcctcctcgtcgATAGAGGAGCGCTGACGGGACGGCAGGCGGCTGGATCTCTGTTTGGGTCGACAGTCTGGACAGAACCAGTCTCCCTCTGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198919 lncRNA upstream 14571 29632524 ~ 29633659 (+) True G147300
TU198918 lncRNA upstream 14571 29633236 ~ 29633659 (+) False G147300
TU198953 lncRNA upstream 25586 29622152 ~ 29622644 (+) True G147318
TU198951 lncRNA upstream 33921 29613340 ~ 29614309 (+) True G147316
TU198941 lncRNA upstream 49957 29596983 ~ 29598273 (+) True G147312
TU198925 lncRNA downstream 25746 29676686 ~ 29680877 (+) True G147305
TU198990 lncRNA downstream 39865 29690805 ~ 29691711 (+) True G147338
TU198993 lncRNA downstream 43122 29694062 ~ 29694642 (+) True G147340
TU198994 lncRNA downstream 45054 29695994 ~ 29696252 (+) False LOC120572592
TU198971 lncRNA downstream 45406 29696346 ~ 29696823 (+) True G147323
XM_039822441.1 mRNA upstream 127971 29516852 ~ 29520259 (+) True LOC120572920
XM_039822442.1 mRNA upstream 127971 29516897 ~ 29520259 (+) False LOC120572920
XM_039822379.1 mRNA upstream 239965 29385915 ~ 29408265 (+) True LOC120572872
XM_039822436.1 mRNA upstream 290790 29356226 ~ 29357440 (+) True LOC120572916
XM_039822384.1 mRNA upstream 305550 29337628 ~ 29342680 (+) False LOC120572875
XM_039821913.1 mRNA downstream 24373 29675313 ~ 29690845 (+) False clrn1
XM_039821914.1 mRNA downstream 40389 29691329 ~ 29696000 (+) True LOC120572592
XM_039822180.1 mRNA downstream 66912 29717852 ~ 29739188 (+) True LOC120572760
XM_039822403.1 mRNA downstream 172279 29823219 ~ 29825432 (+) True LOC120572888
XM_039822466.1 mRNA downstream 227929 29878869 ~ 29883395 (+) True LOC120572934
TU198923 other upstream 30078 29573427 ~ 29618152 (+) True G147303
TU198769 other upstream 167743 29269414 ~ 29480487 (+) True G147192
TU198771 other upstream 226431 29414312 ~ 29421799 (+) True LOC120572956
TU198572 other upstream 582721 29029482 ~ 29065509 (+) False G147035
TU198920 other downstream 24373 29675313 ~ 29680473 (+) True clrn1
TU198992 other downstream 40886 29691826 ~ 29695750 (+) False LOC120572592
TU199012 other downstream 97826 29748766 ~ 29860892 (+) False G147348
TU199023 other downstream 99149 29750089 ~ 29797132 (+) True G147352
TU199068 other downstream 277887 29928827 ~ 29938473 (+) False G147371

Expression Profile