RNA id: TU198990


Basic Information

Item Value
RNA id TU198990
length 287
lncRNA type read_through
GC content 0.61
exon number 2
gene id G147338
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29690805 ~ 29691711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtggccctctgggaaactgagtctGACCGCCCTGATGTAGACACAGCTGAGAAGTCAAGAACGCCAAAATCACCACAAacctcttttattttgaaatGTGGAGTGACGCTGTGagctaagccccgcccccctgTGTGTTGCCGGGGGCGATGGCGCTGATCGAAGGCGTGGGAGACGAGGTGACTCTGCTGTTCGgctcgctgctgctgctcgcCGTGATGCTGCTGGCCTGGATCTCCACCCGCACGGCCGAGCCGCCGAGCACCTGTTCACCACAGGCCCGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198925 lncRNA upstream 9928 29676686 ~ 29680877 (+) True G147305
TU198979 lncRNA upstream 39865 29648230 ~ 29650940 (+) True G147329
TU198919 lncRNA upstream 57146 29632524 ~ 29633659 (+) True G147300
TU198918 lncRNA upstream 57146 29633236 ~ 29633659 (+) False G147300
TU198953 lncRNA upstream 68161 29622152 ~ 29622644 (+) True G147318
TU198993 lncRNA downstream 2351 29694062 ~ 29694642 (+) True G147340
TU198994 lncRNA downstream 4283 29695994 ~ 29696252 (+) False LOC120572592
TU198971 lncRNA downstream 4635 29696346 ~ 29696823 (+) True G147323
TU198973 lncRNA downstream 4635 29696346 ~ 29696823 (+) False G147323
TU198995 lncRNA downstream 5450 29697161 ~ 29698852 (+) True G147342
XM_039822441.1 mRNA upstream 170546 29516852 ~ 29520259 (+) True LOC120572920
XM_039822442.1 mRNA upstream 170546 29516897 ~ 29520259 (+) False LOC120572920
XM_039822379.1 mRNA upstream 282540 29385915 ~ 29408265 (+) True LOC120572872
XM_039822436.1 mRNA upstream 333365 29356226 ~ 29357440 (+) True LOC120572916
XM_039822384.1 mRNA upstream 348125 29337628 ~ 29342680 (+) False LOC120572875
XM_039822180.1 mRNA downstream 26141 29717852 ~ 29739188 (+) True LOC120572760
XM_039822403.1 mRNA downstream 131508 29823219 ~ 29825432 (+) True LOC120572888
XM_039822466.1 mRNA downstream 187158 29878869 ~ 29883395 (+) True LOC120572934
XM_039822398.1 mRNA downstream 219711 29911422 ~ 29934098 (+) True LOC120572883
XM_039822281.1 mRNA downstream 247483 29939194 ~ 29953407 (+) False LOC120572819
TU198920 other upstream 10332 29675313 ~ 29680473 (+) True clrn1
TU198923 other upstream 72653 29573427 ~ 29618152 (+) True G147303
TU198769 other upstream 210318 29269414 ~ 29480487 (+) True G147192
TU198771 other upstream 269006 29414312 ~ 29421799 (+) True LOC120572956
TU198572 other upstream 625296 29029482 ~ 29065509 (+) False G147035
TU198992 other downstream 115 29691826 ~ 29695750 (+) False LOC120572592
TU199012 other downstream 57055 29748766 ~ 29860892 (+) False G147348
TU199023 other downstream 58378 29750089 ~ 29797132 (+) True G147352
TU199068 other downstream 237116 29928827 ~ 29938473 (+) False G147371
TU199070 other downstream 257208 29948919 ~ 30002501 (+) False G147371

Expression Profile