RNA id: TU198572


Basic Information

Item Value
RNA id TU198572
length 2031
RNA type TUCP
GC content 0.43
exon number 2
gene id G147035
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29029482 ~ 29065509 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catcatcatcatcatcatcatcagctttATTGCCAGACTGAAGGTCCATTCAGAAGACACAGACAcgacatacaacatacattaaaaagagaaataaatacaaaagaaaCAATACTGCATTTCTATAAAAGACACCTATACCAGCCCCCAGACCTAAATCAAATTGAGAATCTCTGGCAAGACttgaaaagtttttttatttgtaaaaaaacatttgaaaacccAGGTATCCTTTTCCTTCCACTTCCCAAATATGGGCCACTTAGTGTTGGTcccaatgaaatacatttacgTTTGTAACGTGACAAAATGTGGAACAGTTCAAGGGGTATGAATACCTTTGCAAGCCTCAGTATGtagaggttcactcctcgacgcagcggccgcgggttcgactccgacctgcggccctttgctgcatgtcatccccccccccgcctctctctcccctttcatgtcttcagctgtcctatcaaaataaaggcctaaaatgcccaaaacaatcttaaaaaagaTTATCTCAGCTAGTAAAGACATGAGGAATAAATCGATTGCTGTGATAATGCAACAGATGACAAGTTGACCCAACATCCACACATcagttttataaaaatatatctATTGTTAGTGTAGGTATTATTAAGAGCTGTAGACTATGGAATTCATTACCAGCTGACATTAAGGTCATATCGGACTTAACATTTTTTACTTCCAGCATTAAGTTGTGGCTAAAGGCAAATCAAAACTGTAAGCATTTTTAACTATtgttattagtattattttGTTTAGTTGTGTAGTgagtgaaggtgtgtgtgtgtatgaagaaaTGCCTatgatttttcctttttatttctctttttttcttatgcaTGTATCTGTTTTATAATGTTCTTAGAAATGCCCAACCAGCGACAAGAGTTGAGAATTAGCACTAGCTATAAACTCTATATGCTGCGCATCAGTTACGGGCTTTGTATTGGAACTATGTTTGCTTGTATGGTCCTGTATGGTCCTTGTATGttagataaacaaataaataaaaaaaattataaaaaaaattgcagtAAATACAGCACGTTGAAGACTTCAGGTCAATTCGTACGTTCTAAATATCTGCCTTCCTCGTGTTTGGGTTCACTATGTAAACAGGtaataaattacaaattacagcacgcacggagatgagaagggtatgtatggacttatctaactctggggggacACGGGGAATAacacaaagtcccaataagtcggcgtgttcctttaaaatctTCCAAGAGTGACATCGTGACTAAACCCCAGTAATCCAGTTCAGTGGATTCTCCTTCACACTAGCTCCATAATGCGCCCCCCGGTGGTACTGGTCGTACTACACCGTTGAAAAGCGTCGGAAGAgagtagaaaaaataaaataaaaaatgccgCCTCCAGATGACCAACGGACCCGATTTTTTTCCGCAGCGCACTCGTTCGCATCGGCTCGGACCCGTTCGCTCGCGGTCTGTGAATCTCCATAAGGAAATGAATGACTCTCGGTTGTTTCGCAGCCGTGGTTACTGTGCCACAAGCGATCCACCAAAACCTGAACTCACTGAAAAGTCAAGCCTGAAATCTTGCTCCGTAGCGCGGGCCTCTGGTCCCAGTGATGCGGCATACACAGACCATGAGTATGTGTCGTTACAACAACAGAACCACAAAGAGCCAGTGTGTGAACGGTGTATTTCCCTCCCAGTTCCCCCCAGCTGGTGGAGGAGAGCCCTGAGAGACTTCTTCCACCGTGGGTCGGTTAAAAGGTCCGGTGAAATACCGCAGAGGTCATCATCTCCCGACTGAACGTTGTCCCAGACGTAGTAGTGAAGGTAGTGCTGGTGCTCTCTCTTAAACGAGCAAGTCGTCCTGACTTACAGCTTGGTGTTGAAGCCTTAGTTTGAGTAAATATGCGCTGAGTCCAGCACTCAGGATCAGGACGATGCAGCCAAACACACCGAGGATCGGTACGCTCAGGTACAGACGCCCACCtgatggaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198549 lncRNA upstream 87767 28937066 ~ 28941715 (+) True G147017
TU198539 lncRNA upstream 126143 28891335 ~ 28903339 (+) True G147007
TU198527 lncRNA upstream 174629 28849421 ~ 28854853 (+) True G146996
TU198516 lncRNA upstream 250487 28778566 ~ 28778995 (+) False G146986
TU198581 lncRNA downstream 30761 29096270 ~ 29096600 (+) True G147042
TU198696 lncRNA downstream 108045 29173554 ~ 29173851 (+) True G147129
TU198680 lncRNA downstream 142902 29208411 ~ 29217804 (+) False LOC120573012
XR_005641586.1 lncRNA downstream 145253 29210762 ~ 29235418 (+) True LOC120573012
TU198788 lncRNA downstream 225941 29291450 ~ 29426726 (+) True G147198
XM_039823295.1 mRNA upstream 98844 28927342 ~ 28930638 (+) True LOC120573516
XM_039823236.1 mRNA upstream 272797 28741993 ~ 28756685 (+) True LOC120573484
XM_039821907.1 mRNA upstream 318422 28706623 ~ 28711060 (+) True LOC120572585
XM_039821906.1 mRNA upstream 325335 28683021 ~ 28704147 (+) True LOC120572584
XM_039821412.1 mRNA upstream 358661 28662620 ~ 28670821 (+) True LOC120572212
XM_039821457.1 mRNA downstream 7301 29072810 ~ 29077484 (+) True LOC120572238
XM_039821455.1 mRNA downstream 14704 29080213 ~ 29090950 (+) True LOC120572237
XM_039821456.1 mRNA downstream 14704 29080213 ~ 29090950 (+) False LOC120572237
XM_039822396.1 mRNA downstream 108834 29174343 ~ 29236780 (+) False LOC120572882
XM_039822393.1 mRNA downstream 108834 29174343 ~ 29183347 (+) True LOC120572882
TU198224 other upstream 377969 28638750 ~ 28651513 (+) False tec
TU198223 other upstream 377969 28639080 ~ 28651513 (+) False tec
TU198209 other upstream 398374 28617924 ~ 28631108 (+) False tec
TU198152 other upstream 444415 28555552 ~ 28585067 (+) True G146753
TU198769 other downstream 203905 29269414 ~ 29480487 (+) True G147192
TU198771 other downstream 348803 29414312 ~ 29421799 (+) True LOC120572956
TU198923 other downstream 507918 29573427 ~ 29618152 (+) True G147303
TU198920 other downstream 609804 29675313 ~ 29680473 (+) True clrn1
TU198992 other downstream 626317 29691826 ~ 29695750 (+) False LOC120572592

Expression Profile