RNA id: XM_039821906.1


Basic Information

Item Value
RNA id XM_039821906.1
length 1027
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120572584
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 28683021 ~ 28704147 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATgttacttttcccagggacagatttgacGCCGATGCTGCCTTCTCATCTGCGCGCTCACAATTTCTTCACACGGGACGTGACAGAGGCTGGCATTTTGGAGGACGGCAACATTGTGAAGCCAGAGAGATACAAAGCCATTCGCCAGACTTACGAGGACCAGAGACGGTTTGTGACGCTCTACGACACTGAGAACAAGATCCCAGTGTTTTCTGCTTACAAGTACAGAGGacaaCTTGAAGAAAGAAACACCAACAACATGTGGGATGGCAAATACCACAAACAGGCCATTGATGATGATTATAAAAACAATAGCAGAGGCTATAATAGGGGCCATTTATTTCCAAATTCTTATGcacttgatttaaaagaaaaaaactcaacGTTCACCCTGACAAACATCGTTCCACAAGCAGAGTCTTTCAACAATGGCAGCTGGAGAAAAATGGAGACCTGCACCAAATGCATTCTGGAAAAGTACTGCATCAACAATAATGATGCCAAAGAAGCCTTTTTAGTGACCGGGGCACAGCCCAGCATTAACAACACAACTTAAAACAGGGTTAATATACCTTCCATGCTCTGGTCAGCATTCTGCTGTTACAGTAAGAACAAGAATAAGTGGCTAGCGAGCGCATACTGGGGCGACAATGTTCAGGAAAATGAGACTAAATATCTGCAGACAAAGACTTTGGCTGAACTCCACAGAGCACAGTGAACTCAACATTTGAGGTGTTTCCCGGAACACTGTGTCCTCTCGACACAACTGTTGCCGTATTTTACCCAGAATTTGGTAAAATGTGCAAATGCCCACCCCAAGCGCCAACCACATCGGCCCCTCCCACTACCACAACTACGGTTCCCAACAACTACTGCTTCTCCAAGTAGCACCACTATACCTACAACTACAGCAACTACAAGTTCACCAACAACCACAGTCCCTACTAATATTACTTATACTACAAGAGCTACAACTacaacaactacaactacaAAGAAGATAGATAATAATTCAGAAAATTATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198158 lncRNA upstream 108578 28551799 ~ 28574443 (+) True G146755
TU198201 lncRNA upstream 134327 28539345 ~ 28548694 (+) True LOC120572290
XR_005641415.1 lncRNA upstream 134912 28541107 ~ 28548109 (+) False LOC120572290
TU198204 lncRNA upstream 138072 28544240 ~ 28544949 (+) True G146783
TU198194 lncRNA upstream 156318 28526285 ~ 28526703 (+) True G146779
TU198513 lncRNA downstream 20063 28724210 ~ 28778995 (+) False G146986
TU198512 lncRNA downstream 31206 28735353 ~ 28778995 (+) True G146986
TU198519 lncRNA downstream 55494 28759641 ~ 28763053 (+) True G146989
TU198510 lncRNA downstream 70812 28774959 ~ 28778995 (+) False G146986
TU198516 lncRNA downstream 74419 28778566 ~ 28778995 (+) False G146986
XM_039821412.1 mRNA upstream 12200 28662620 ~ 28670821 (+) True LOC120572212
XM_039821904.1 mRNA upstream 31475 28617865 ~ 28651546 (+) True tec
XM_039821538.1 mRNA upstream 69478 28612776 ~ 28613543 (+) True LOC120572291
XM_039821513.1 mRNA upstream 215900 28451993 ~ 28467121 (+) True LOC120572276
XM_039821514.1 mRNA upstream 215900 28455026 ~ 28467121 (+) False LOC120572276
XM_039821907.1 mRNA downstream 2476 28706623 ~ 28711060 (+) True LOC120572585
XM_039823236.1 mRNA downstream 37846 28741993 ~ 28756685 (+) True LOC120573484
XM_039823295.1 mRNA downstream 223195 28927342 ~ 28930638 (+) True LOC120573516
XM_039821457.1 mRNA downstream 368663 29072810 ~ 29077484 (+) True LOC120572238
XM_039821455.1 mRNA downstream 376066 29080213 ~ 29090950 (+) True LOC120572237
TU198224 other upstream 31508 28638750 ~ 28651513 (+) False tec
TU198223 other upstream 31508 28639080 ~ 28651513 (+) False tec
TU198209 other upstream 51913 28617924 ~ 28631108 (+) False tec
TU198152 other upstream 97954 28555552 ~ 28585067 (+) True G146753
TU198568 other downstream 325335 29029482 ~ 29065509 (+) False G147035
TU198572 other downstream 325335 29029482 ~ 29065509 (+) False G147035
TU198574 other downstream 325335 29029482 ~ 29065509 (+) False G147035
TU198769 other downstream 565267 29269414 ~ 29480487 (+) True G147192
TU198771 other downstream 710165 29414312 ~ 29421799 (+) True LOC120572956

Expression Profile