RNA id: XM_039821538.1


Basic Information

Item Value
RNA id XM_039821538.1
length 646
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120572291
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 28612776 ~ 28613543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCCAAtttgaaaaattatatttgtatcttctcatgatacatttttacaggTTCAGGGAGGGGATGAAGACCCTTGGTGTTCTTGATGCAATAAGAATGCACCCAGATGCTTTCAGACCGCTGTTTTGTCACGAGCCATCCCCACTCACAGCGGATGTACTAGAACTGTCAGCAGTGGGCAGGAACAAAAGAAGGGCAGAGGAATGTGTGGTTGCATTTTGGAGGGACTACCTGCTGGATGTTGAGGaGCAGGAGGGACCCTTCCAACTTGGGGGTATCCTGGCCTTTACGACGGGAGCAAATGATATTCCACCCCTGGGCTTCTCCCCACTACCTTCAGTGGTTTTTCTCCATGAGCTGCCCCTCAGACAAGGCCGTCATTTACCCACCGCAAACACATGCATTAACTGCCTGCGGTTGCCAGTCCTGAAAAAATTCGAGGATTTTAAGGAAACTATGgattttgcattaaaaacacTCAGGGATTTGGTCAGGAATGACTTCCAAGAAGTCCttaatatacattattaaaatCTGTTGCCTGTTGAACTTGACTAAATTGAAGAGGCATCGTTGTCAATAACTCACCATTTcctaatacattattaatgtcttgtttaaacaattaaaaatggaaTAATCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198158 lncRNA upstream 38333 28551799 ~ 28574443 (+) True G146755
TU198201 lncRNA upstream 64082 28539345 ~ 28548694 (+) True LOC120572290
XR_005641415.1 lncRNA upstream 64667 28541107 ~ 28548109 (+) False LOC120572290
TU198204 lncRNA upstream 67827 28544240 ~ 28544949 (+) True G146783
TU198175 lncRNA upstream 68027 28465443 ~ 28544749 (+) True G146765
TU198513 lncRNA downstream 110667 28724210 ~ 28778995 (+) False G146986
TU198512 lncRNA downstream 121810 28735353 ~ 28778995 (+) True G146986
TU198519 lncRNA downstream 146098 28759641 ~ 28763053 (+) True G146989
TU198510 lncRNA downstream 161416 28774959 ~ 28778995 (+) False G146986
TU198516 lncRNA downstream 165023 28778566 ~ 28778995 (+) False G146986
XM_039821513.1 mRNA upstream 145655 28451993 ~ 28467121 (+) True LOC120572276
XM_039821514.1 mRNA upstream 145655 28455026 ~ 28467121 (+) False LOC120572276
XM_039821902.1 mRNA upstream 166116 28409545 ~ 28446660 (+) True txk
XM_039821535.1 mRNA upstream 227466 28382955 ~ 28385310 (+) True LOC120572286
XM_039821530.1 mRNA upstream 316794 28275398 ~ 28295982 (+) True LOC120572284
XM_039821904.1 mRNA downstream 4322 28617865 ~ 28651546 (+) True tec
XM_039821412.1 mRNA downstream 49077 28662620 ~ 28670821 (+) True LOC120572212
XM_039821906.1 mRNA downstream 69478 28683021 ~ 28704147 (+) True LOC120572584
XM_039821907.1 mRNA downstream 93080 28706623 ~ 28711060 (+) True LOC120572585
XM_039823236.1 mRNA downstream 128450 28741993 ~ 28756685 (+) True LOC120573484
TU198152 other upstream 27709 28555552 ~ 28585067 (+) True G146753
TU198155 other upstream 27709 28555552 ~ 28585067 (+) False G146753
TU198128 other upstream 193664 28331156 ~ 28419112 (+) False G146744
TU198160 other upstream 211426 28399266 ~ 28401350 (+) True G146757
TU198127 other upstream 240355 28331156 ~ 28372421 (+) False G146744
TU198209 other downstream 4381 28617924 ~ 28631108 (+) False tec
TU198224 other downstream 25207 28638750 ~ 28651513 (+) False tec
TU198223 other downstream 25537 28639080 ~ 28651513 (+) False tec
TU198568 other downstream 415939 29029482 ~ 29065509 (+) False G147035
TU198572 other downstream 415939 29029482 ~ 29065509 (+) False G147035

Expression Profile