RNA id: XM_039821907.1


Basic Information

Item Value
RNA id XM_039821907.1
length 690
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC120572585
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 28706623 ~ 28711060 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gACACGGTTTGGATGATTTCTGGAAAGCCAGTCCATAAGCTGTGTTGGACGATGACGTCACCGAATACGTGGTATCCCCTCGCTgcctccctctttctgtccattGTTCCCACAGTGGCTGAAGTGGTAAATTCGTTGTCAGACTGTGACCAGTTTCTCCTCGAGGGAACTCAGCCACAGGTCCCGGGCATCTTGGAAGGCGGGAGAATCCTGAACCAGAACCGATACAAACCCATTTGCCAGACTTTTGACAACGAGAGACGGTTCGTGACTCTCTACGACACCGAGAACAGGATCCCAGTGTTTTCTGCTTACAAGTACAGAGGGGGAGTAGGAAAGAGACCCGCAAACGACTGGAAGATAGAGCCCCAGCTTGAGGACGAAGATGACAAGAACATGAAGCTCGGAGACAAAAACAAGACCTACAACCACCAGGCTGGGAACATAGATTACAGACGCAATAGAGTGTTTGACAGGGGCCACATATTTCCGAGCTGTATGGCCAGCGTTGTTCAAAAAGCAGCTTCACCTGTCAATTCACACTTCAACATCTGCCCCATGCACTTTAACTACGTCAACATCTGCCCCTCTTACTTCAACATCTGCCAGTCACACTTCAGCTTCTGCCCCTCACACATTAACTTCTGGCCCTTCCtaaggccgttttatgcttctgcgtcaaatTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198158 lncRNA upstream 132180 28551799 ~ 28574443 (+) True G146755
TU198201 lncRNA upstream 157929 28539345 ~ 28548694 (+) True LOC120572290
XR_005641415.1 lncRNA upstream 158514 28541107 ~ 28548109 (+) False LOC120572290
TU198204 lncRNA upstream 161674 28544240 ~ 28544949 (+) True G146783
TU198194 lncRNA upstream 179920 28526285 ~ 28526703 (+) True G146779
TU198513 lncRNA downstream 13150 28724210 ~ 28778995 (+) False G146986
TU198512 lncRNA downstream 24293 28735353 ~ 28778995 (+) True G146986
TU198519 lncRNA downstream 48581 28759641 ~ 28763053 (+) True G146989
TU198510 lncRNA downstream 63899 28774959 ~ 28778995 (+) False G146986
TU198516 lncRNA downstream 67506 28778566 ~ 28778995 (+) False G146986
XM_039821906.1 mRNA upstream 2476 28683021 ~ 28704147 (+) True LOC120572584
XM_039821412.1 mRNA upstream 35802 28662620 ~ 28670821 (+) True LOC120572212
XM_039821904.1 mRNA upstream 55077 28617865 ~ 28651546 (+) True tec
XM_039821538.1 mRNA upstream 93080 28612776 ~ 28613543 (+) True LOC120572291
XM_039821513.1 mRNA upstream 239502 28451993 ~ 28467121 (+) True LOC120572276
XM_039823236.1 mRNA downstream 30933 28741993 ~ 28756685 (+) True LOC120573484
XM_039823295.1 mRNA downstream 216282 28927342 ~ 28930638 (+) True LOC120573516
XM_039821457.1 mRNA downstream 361750 29072810 ~ 29077484 (+) True LOC120572238
XM_039821455.1 mRNA downstream 369153 29080213 ~ 29090950 (+) True LOC120572237
XM_039821456.1 mRNA downstream 369153 29080213 ~ 29090950 (+) False LOC120572237
TU198224 other upstream 55110 28638750 ~ 28651513 (+) False tec
TU198223 other upstream 55110 28639080 ~ 28651513 (+) False tec
TU198209 other upstream 75515 28617924 ~ 28631108 (+) False tec
TU198152 other upstream 121556 28555552 ~ 28585067 (+) True G146753
TU198568 other downstream 318422 29029482 ~ 29065509 (+) False G147035
TU198572 other downstream 318422 29029482 ~ 29065509 (+) False G147035
TU198574 other downstream 318422 29029482 ~ 29065509 (+) False G147035
TU198769 other downstream 558354 29269414 ~ 29480487 (+) True G147192
TU198771 other downstream 703252 29414312 ~ 29421799 (+) True LOC120572956

Expression Profile