RNA id: XM_039821456.1


Basic Information

Item Value
RNA id XM_039821456.1
length 1177
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC120572237
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29080213 ~ 29090950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTATGGTACAGCCccccagtcagtcagtcagtcagtcagtccgtCTAGAAGCAACATGGCGATAACAACACTGTGCGCCGTCATTGCTGCTCTGAGAGTCATTCCCAACAGATCCCAGTTCTTCCAGTATGAGTCCGTCACTGTGAGCTGTGGGCCGCTGGGAAACTCTTCTGGCTGGAGAGTTAAGAGGAACACATCCACAAACATAAACGAATCCTGTGATAGAATGAATGAACCTCACTGCTCCATTAGTGAACTTTACCCGTTAGACACCGGCGTGTACTGGTGTGAGTCTGCAGCGGGAGAATGCAGCAACACCGTCAACATCACCGTGATCGGCGCTGGCGGTGTGATCCTGGACAGTCCAGTCCGtcctgtgatggagggagacTCTGTCACTCTGCGCTGCAGAACCAAGACGACTTCCTCCTTCAACCTCACAGCTGATTTCTATAAAGATGGCCGCCTCATCAGGAGCAGCTCTACAGAAAACCTGACCATCCATAGTGTTTCAAATTCAGATGCAGGACTCTACAGGTGCAACGTCTCTGGAGCTGGAGAATCACCAGACGGCTGGCTGACTGTCAGAGGGCATCCTGAGTCGCCAGACTCCCCTTTCACACGCATTCTACTTCCTGTGATGGGCCTCGTGCTGGTCGCGCTTGTCTCTGTGATGCTGCTCTGCCTCTGGAGAAGCCGCAAAGGTAAAGTGAAGCGTGATGTCTCGTACACTAATGTTATCATCACACAGGAAGAGCAGCCCAACAGGATCAGAGATGTGGACGATGCAGAGTCCTTCTACTCTACTCTACAACCGGTAAACCACCTGACAGGAAACATCAACAGTCTCACTCCCAGCACGCCAAAAAACAACGCTTGGCCATgagcctttggcgtttgttattgactgaagtctcctttagtgtctCGGTCAGACGCAGGAGGCTTTCAACATgtggaaatgtacattttatgattttatttgTCTTCTGAGCAGCCTGGCTGaaactttttaacaaagctGAGCCACTTCATCGACGAGGGAATGAAGTCTTAACGGTCGACCAAAACAGTGACGTCTCAATTTCATCATCTGGATATAATGAAACAGAAAGTTCAGTGTCTGTGTAATAAAACAAGCTGAAACTGAAGTGAAATAAATCCCATGAAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198569 lncRNA upstream 14704 29047895 ~ 29065509 (+) True G147035
TU198549 lncRNA upstream 138498 28937066 ~ 28941715 (+) True G147017
TU198539 lncRNA upstream 176874 28891335 ~ 28903339 (+) True G147007
TU198527 lncRNA upstream 225360 28849421 ~ 28854853 (+) True G146996
TU198514 lncRNA upstream 301218 28778658 ~ 28778995 (+) False G146986
TU198581 lncRNA downstream 5320 29096270 ~ 29096600 (+) True G147042
TU198696 lncRNA downstream 82604 29173554 ~ 29173851 (+) True G147129
TU198680 lncRNA downstream 117461 29208411 ~ 29217804 (+) False LOC120573012
XR_005641586.1 lncRNA downstream 119812 29210762 ~ 29235418 (+) True LOC120573012
TU198788 lncRNA downstream 200500 29291450 ~ 29426726 (+) True G147198
XM_039821457.1 mRNA upstream 2729 29072810 ~ 29077484 (+) True LOC120572238
XM_039823295.1 mRNA upstream 149575 28927342 ~ 28930638 (+) True LOC120573516
XM_039823236.1 mRNA upstream 323528 28741993 ~ 28756685 (+) True LOC120573484
XM_039821907.1 mRNA upstream 369153 28706623 ~ 28711060 (+) True LOC120572585
XM_039821906.1 mRNA upstream 376066 28683021 ~ 28704147 (+) True LOC120572584
XM_039822396.1 mRNA downstream 83393 29174343 ~ 29236780 (+) False LOC120572882
XM_039822393.1 mRNA downstream 83393 29174343 ~ 29183347 (+) True LOC120572882
XM_039822394.1 mRNA downstream 83393 29174343 ~ 29183347 (+) False LOC120572882
XM_039822395.1 mRNA downstream 83393 29174343 ~ 29183347 (+) False LOC120572882
XM_039822375.1 mRNA downstream 102860 29193810 ~ 29202524 (+) True LOC120572868
TU198568 other upstream 14704 29029482 ~ 29065509 (+) False G147035
TU198572 other upstream 14704 29029482 ~ 29065509 (+) False G147035
TU198574 other upstream 14704 29029482 ~ 29065509 (+) False G147035
TU198224 other upstream 428700 28638750 ~ 28651513 (+) False tec
TU198769 other downstream 178464 29269414 ~ 29480487 (+) True G147192
TU198771 other downstream 323362 29414312 ~ 29421799 (+) True LOC120572956
TU198923 other downstream 482477 29573427 ~ 29618152 (+) True G147303
TU198920 other downstream 584363 29675313 ~ 29680473 (+) True clrn1
TU198992 other downstream 600876 29691826 ~ 29695750 (+) False LOC120572592

Expression Profile