RNA id: TU198539


Basic Information

Item Value
RNA id TU198539
length 522
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G147007
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 28891335 ~ 28903339 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGTATTGCACTGGATATCTATGTAATTTAATAAAGCGAGATACTTTGAACCTTTTCAAACTCAAAGGTGAGCCTGTGTTGAGAATACCTGACCAATTTGGTGTTCATAGCTTCATGTTTAGGCTAAGCGTGCTCAGTATTATAGTTGTgtcattttaagtaaaaaaggAACTTGTATTAAACACATACCAATATTGaacaacatttgaaaacacactaaaagaAAATTAATCTTAACATTTACTAAAATAGAACATctaataatacaaaatgaatCTTAACCAAtctataaaaacacaataaaacaactatttacgtgcgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggggggggctgcaaGTCTGTTGTGCCACGCGATACGCTGCCCTTGGGGTTGAGCCAGCGCCAACATCAGCCTGCCGTACTGAGGGCCTTCTCTGGTGTCTGTtgaggaaaacacaaaacacagatgagGTCTGGTGTAACAGACATACAATGGAG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198527 lncRNA upstream 36482 28849421 ~ 28854853 (+) True G146996
TU198512 lncRNA upstream 112340 28735353 ~ 28778995 (+) True G146986
TU198549 lncRNA downstream 33727 28937066 ~ 28941715 (+) True G147017
TU198569 lncRNA downstream 144556 29047895 ~ 29065509 (+) True G147035
TU198581 lncRNA downstream 192931 29096270 ~ 29096600 (+) True G147042
TU198696 lncRNA downstream 270215 29173554 ~ 29173851 (+) True G147129
TU198680 lncRNA downstream 305072 29208411 ~ 29217804 (+) False LOC120573012
XM_039823236.1 mRNA upstream 134650 28741993 ~ 28756685 (+) True LOC120573484
XM_039821907.1 mRNA upstream 180275 28706623 ~ 28711060 (+) True LOC120572585
XM_039821906.1 mRNA upstream 187188 28683021 ~ 28704147 (+) True LOC120572584
XM_039821412.1 mRNA upstream 220514 28662620 ~ 28670821 (+) True LOC120572212
XM_039821904.1 mRNA upstream 239789 28617865 ~ 28651546 (+) True tec
XM_039823295.1 mRNA downstream 24003 28927342 ~ 28930638 (+) True LOC120573516
XM_039821457.1 mRNA downstream 169471 29072810 ~ 29077484 (+) True LOC120572238
XM_039821455.1 mRNA downstream 176874 29080213 ~ 29090950 (+) True LOC120572237
XM_039821456.1 mRNA downstream 176874 29080213 ~ 29090950 (+) False LOC120572237
XM_039822396.1 mRNA downstream 271004 29174343 ~ 29236780 (+) False LOC120572882
TU198224 other upstream 239822 28638750 ~ 28651513 (+) False tec
TU198223 other upstream 239822 28639080 ~ 28651513 (+) False tec
TU198209 other upstream 260227 28617924 ~ 28631108 (+) False tec
TU198152 other upstream 306268 28555552 ~ 28585067 (+) True G146753
TU198568 other downstream 126143 29029482 ~ 29065509 (+) False G147035
TU198572 other downstream 126143 29029482 ~ 29065509 (+) False G147035
TU198574 other downstream 126143 29029482 ~ 29065509 (+) False G147035
TU198769 other downstream 366075 29269414 ~ 29480487 (+) True G147192
TU198771 other downstream 510973 29414312 ~ 29421799 (+) True LOC120572956

Expression Profile