RNA id: TU198224


Basic Information

Item Value
RNA id TU198224
length 3870
RNA type TUCP
GC content 0.46
exon number 12
gene id tec
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 28617865 ~ 28651546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CagagatttcatttttttcaacgtgGAACTGATTTATTCTGAGTTTTTACCGTTTTTTAGTCTGTAGGTCTGTTTGTTTTGGAGAGGAGGAGACCTCCGCGTATAAAAAACCTCCTGAAAGATGAACACTGAAGGAATCCTAACCGGGAGACGCTGACTGCATCGAAGACTACAACTCCCATGATCCAAACTCCGCCGATTGTTATTGTTTAGATTGAGAGGCAGAAAACTACATATTGTGCTTTTAACTTGATtacaagaaatgaaaaaaatgaaaagaaaatccatttattttaggaattaaGCGAGGAAGGCTACATCCCAAGTAACTATGTAACAGAGAAGAAATCCGGAAACGTGCAGCAGTTTGTTTGGTACAGTAAACAAGTGAACAGGAACAAAGCAGAGGAGCTGCTGAGGAAAGAGAACAAAGAAGGCGCCTTCATTGTCAGAGACTCCAGCACTCCAGGAACCTACACCGTCTCCCTCTATGCCAAGTCTGCTGCCGGGGATGGAAGTGCCGCTATAAAACATTACCACATCAAGGTGACCCAAGGGACGCCTCAACAGTTTTACCTCGCCGAGAAACACTTGTTCAGCTCTATCCCCGACCTGATCGAGTACCACAAACACAACGCAGCAGGTCttgttgccaggttgaggtatCCTGTAGGGAAACAGGAAAAGTCTGCTCCGTCCACCGCCGGCTTCAGCTACGAGAAGTGGGAGATCGACCCCAGCGAGCTGACGTTCATGAAGGAGCTGGGCAGCGGCCAGTTCGGTCTGGTGAGGCTCGGCAAGTGGAGGGCTCAGCACCGGGTGGCCATCAAGGCCATCAGAGAGGGAGCCATGTACGAGGAGGACTTCATCGAGGAGGCTAAAGTCATGatGAGACTGTCTCACCCTAAACTGGTGCAGCTGTACGGAGTGTGCAGCCAGCAGAATCCCATTTACATCGTCACAGAGTTCATGGAGAACGGCTGCCTGCTGAACTTCCTCCGGCAGCGCCGGGGCAGCTTCAACCTGGGGTCCTTGCTGAGTATCTGCCTGGACGTCAGCAAGGGCATGGAGCACCTGGAGGCCAACGGCTTCATCCACAGAGATCTGATACGTGTTAGACGACCAGTACACCAGCTCATCCGGAGCCAAGTTCCCAGTGAAGTGGTCGCCTCCTGAAGTCTTCAACTTCTGCAAATACAGCAGCAAGTCGGACGTCTGGTCCTTTGGTGTGCTGATGTGGGAGGTTTTCACTGAGGGCCGCATGCCGTTCGAACAGAGTCAGAACCACGAGGTGGTAACCTTGGTTACCAAGGGTCACCGCCTCTACAGGCCCAAAATGGCCACGCCCGCCATCTATGACATCATGCAGATCAGTTGGCACGAGAGACCGGAGGAGCGTCCGTCGTTCGCTCAACTCTGCCTGATGATCTCCGACAGTCTCGAGTGTGACACCCCTCCCCCAAACTGATCACCTGACCAATCGGTTGCTTCGGCCACGTTGGCGCCTAAAACTCCTGCTCCGTGGAAACCTGCCATTCCTTTTACGGTGTTTCGGCAGTTTCTGTCTTAACGTACACGGCACAACAACATGGAGAACATGGTGCAATGGTTCTTACAGCGTCTGGAACTGACCAGTCAGATGGAGAGGATGGAACCAATCACACCAGCTGGAGTCCCACTCATCCACCAATCACGTTTTGTTTATCCAATCAAGTCACCGGTAACAGCTCACAACCCCCGCGACATGAAACTGAAGCTGCGTCCACTTCACAAACTGCTGCTCATGTTGGATTGTGTTTTTGGTGACGAGTCCGACACCAACATCGATGGACAGCGATGTAGAAAACACATAACAGGCTCTTGTTAAAGGAAATATCAGCTCATTAATCTTCAAACGAACGTTTTGCCTACCTCACCGTGGGTTTTGCCTCTAAGTCGGACATTAGGctaatggcgcttacccactgctagtaccagctctactcggcTCTACTCGACCACGGTGCCCATTCTCAATTTTCCTTTGCAGATTTAGTcccgcctcatgcgtgaggcgatCATGGCTGGTCGTCAtctgacctaacgcgacacacacacagaacgttgaaggtgtgttgtgtttttcattctcagcatgtggctgttgccagaagacaaatttagtttcaaaaaaagctggaggcagcaaaaaaaccaccgctggctaaactatttaaaaatggcgggtttgttcaggacgcAAAATTATGAATCCccctatggccacgccaagactcGCCCTATGAAGCACCTCGATTGGTtgggggttaggcatttgaccttgagtggttaaggttaggatagccgattggtcaagGGGacaggacctgtacaaatggggttacgttaccttgcgtaagcatagATGCCTCCAACGCTATTGAAGGGCgagtcttggcgtggccatagtgggattcgtaatttcacGTTCAGGACATCCCCGTCTGTCGCTAACGACGATGACGGgatgattagtgacgattctctccgaccaatcagtagtctgcagtgTTTTCATGTCACCCTTTTGGtttcgcctcagctcgcttggaacctcgaccgAGGTGAtcctaaaaaaagtacctgttagcagtaGGGATGTAACGGTATGGAAACTTAACCTCACGGTTATAGTGACCAAAATTATCACGGTTTTTGGTTATTATCgcggtattttttttaaatatataggCAAAACcttatcaaaagtgcaacttTTAACATCAAAGGAACAAGGGTTcagcatgtaaacagcttatttGTCAGGAACATTTCCAGTAGATTTccgcatatcaatttatgttcatatatataatagattttggcccgcctagttgtgcgccaaaccaaaaagacgggaAACTGTTTTACAGACTGCAGTTGTgcaacactcaaagcagaatttggcagatttgccgactttgaggcTCAGAAATTGCCATAGAACCAGAGAGTTTACATATTCAGGCTCTGAATGaggttgttgtaaaaaaaaaattatctttgatTTGCTTAACTctgtgatggctaaggaactttttttgctgactttttagggctttatgtcgaccaaactgttaGTGAGAAGGCTATTTGAGACACAAATGATACAGTCACAGgtatttttcaacttttcagTTGAAAGAAATCATGTCAAACACGTCTGGCCCttaatgtgattctcattttccagtgtggccctttagTGAAGTCGAGTTCGACACCCCCTGACTTAAATGAAAACGGTAATTGTTATCGTCAACATTTTTATCGCAGTTTACCGTTACACCTgtaatcgttacatccctagttggcaggtaccagggactttttttcataatgggaaaaccaaaaaaaggtgaggcgagtcgagcaggtaccatgtaatggaaaaacgccataagtgctttggtgttgatCTGCAAATGTTAATGAGAACGGTATCAGATAACAAAAGGTACGTCAAGCCACAACACACAGTATGAATGACTCGGCTGTGTGAAGTGTTCCTGTAACATTTAAGGAATGACCTCTGTTTCTTTGATTTGTTTCATTCCACTGTCCCACAAATTTACCTTACTCCCATCACATCCTGCACAATAATATTAAAAGTACTGTAAATGAGTGAAAGTATACGATTGGGGTGTCATTAAGCGTTTGATAACATCGTCATGGAGAAGAACACTTTTATTATGAGTGGAGTACAAGTATAAAGTATAtagcatgaaatggaaataatCAAGTTTTTTTGTAATACAATTGTTAAGAAAATGTACTTGGATCATCAAGTTGTCATGATGAGGAACTTTGAAAGCACTCACAGTTAtagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198158 lncRNA upstream 64307 28551799 ~ 28574443 (+) True G146755
TU198201 lncRNA upstream 90056 28539345 ~ 28548694 (+) True LOC120572290
XR_005641415.1 lncRNA upstream 90641 28541107 ~ 28548109 (+) False LOC120572290
TU198204 lncRNA upstream 93801 28544240 ~ 28544949 (+) True G146783
TU198194 lncRNA upstream 112047 28526285 ~ 28526703 (+) True G146779
TU198513 lncRNA downstream 72697 28724210 ~ 28778995 (+) False G146986
TU198512 lncRNA downstream 83840 28735353 ~ 28778995 (+) True G146986
TU198519 lncRNA downstream 108128 28759641 ~ 28763053 (+) True G146989
TU198510 lncRNA downstream 123446 28774959 ~ 28778995 (+) False G146986
TU198516 lncRNA downstream 127053 28778566 ~ 28778995 (+) False G146986
XM_039821538.1 mRNA upstream 25207 28612776 ~ 28613543 (+) True LOC120572291
XM_039821513.1 mRNA upstream 171629 28451993 ~ 28467121 (+) True LOC120572276
XM_039821514.1 mRNA upstream 171629 28455026 ~ 28467121 (+) False LOC120572276
XM_039821902.1 mRNA upstream 192090 28409545 ~ 28446660 (+) True txk
XM_039821535.1 mRNA upstream 253440 28382955 ~ 28385310 (+) True LOC120572286
XM_039821412.1 mRNA downstream 11107 28662620 ~ 28670821 (+) True LOC120572212
XM_039821906.1 mRNA downstream 31508 28683021 ~ 28704147 (+) True LOC120572584
XM_039821907.1 mRNA downstream 55110 28706623 ~ 28711060 (+) True LOC120572585
XM_039823236.1 mRNA downstream 90480 28741993 ~ 28756685 (+) True LOC120573484
XM_039823295.1 mRNA downstream 275829 28927342 ~ 28930638 (+) True LOC120573516
TU198209 other upstream 7642 28617924 ~ 28631108 (+) False tec
TU198152 other upstream 53683 28555552 ~ 28585067 (+) True G146753
TU198155 other upstream 53683 28555552 ~ 28585067 (+) False G146753
TU198160 other upstream 237400 28399266 ~ 28401350 (+) True G146757
TU198139 other upstream 285082 28350866 ~ 28353668 (+) True G146747
TU198568 other downstream 377969 29029482 ~ 29065509 (+) False G147035
TU198572 other downstream 377969 29029482 ~ 29065509 (+) False G147035
TU198574 other downstream 377969 29029482 ~ 29065509 (+) False G147035
TU198769 other downstream 617901 29269414 ~ 29480487 (+) True G147192
TU198771 other downstream 762799 29414312 ~ 29421799 (+) True LOC120572956

Expression Profile