RNA id: TU198158


Basic Information

Item Value
RNA id TU198158
length 220
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G146755
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 28551799 ~ 28574443 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtctctgtgtgtgtgtgcgtgtctgtgtgtgtctgtgtgtgtgtctctgtgtgtgtgtgtgtctgtgtgtgtctgtctgtgtgtgtctgtgtgtgtctgtctgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtat

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198201 lncRNA upstream 3105 28539345 ~ 28548694 (+) True LOC120572290
XR_005641415.1 lncRNA upstream 3690 28541107 ~ 28548109 (+) False LOC120572290
TU198204 lncRNA upstream 6850 28544240 ~ 28544949 (+) True G146783
TU198175 lncRNA upstream 7050 28465443 ~ 28544749 (+) True G146765
TU198193 lncRNA upstream 22631 28520927 ~ 28529168 (+) True G146778
TU198513 lncRNA downstream 149767 28724210 ~ 28778995 (+) False G146986
TU198512 lncRNA downstream 160910 28735353 ~ 28778995 (+) True G146986
TU198519 lncRNA downstream 185198 28759641 ~ 28763053 (+) True G146989
TU198510 lncRNA downstream 200516 28774959 ~ 28778995 (+) False G146986
TU198516 lncRNA downstream 204123 28778566 ~ 28778995 (+) False G146986
XM_039821513.1 mRNA upstream 84678 28451993 ~ 28467121 (+) True LOC120572276
XM_039821514.1 mRNA upstream 84678 28455026 ~ 28467121 (+) False LOC120572276
XM_039821902.1 mRNA upstream 105139 28409545 ~ 28446660 (+) True txk
XM_039821535.1 mRNA upstream 166489 28382955 ~ 28385310 (+) True LOC120572286
XM_039821531.1 mRNA upstream 255817 28275399 ~ 28295982 (+) False LOC120572284
XM_039821538.1 mRNA downstream 38333 28612776 ~ 28613543 (+) True LOC120572291
XM_039821904.1 mRNA downstream 43422 28617865 ~ 28651546 (+) True tec
XM_039821412.1 mRNA downstream 88177 28662620 ~ 28670821 (+) True LOC120572212
XM_039821906.1 mRNA downstream 108578 28683021 ~ 28704147 (+) True LOC120572584
XM_039821907.1 mRNA downstream 132180 28706623 ~ 28711060 (+) True LOC120572585
TU198128 other upstream 132687 28331156 ~ 28419112 (+) False G146744
TU198160 other upstream 150449 28399266 ~ 28401350 (+) True G146757
TU198127 other upstream 179378 28331156 ~ 28372421 (+) False G146744
TU198139 other upstream 198131 28350866 ~ 28353668 (+) True G146747
TU198142 other upstream 198131 28350866 ~ 28353668 (+) False G146747
TU198209 other downstream 43481 28617924 ~ 28631108 (+) False tec
TU198224 other downstream 64307 28638750 ~ 28651513 (+) False tec
TU198223 other downstream 64637 28639080 ~ 28651513 (+) False tec
TU198568 other downstream 455039 29029482 ~ 29065509 (+) False G147035
TU198572 other downstream 455039 29029482 ~ 29065509 (+) False G147035

Expression Profile