RNA id: XM_039821514.1


Basic Information

Item Value
RNA id XM_039821514.1
length 3063
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC120572276
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 28451993 ~ 28467121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTGGCCACTCGCTGGTACAGAGCACCTGAACTGCTGGTGGGAGACACCAAGTATGGAAAGGGACCTGACGGCTCATCACCAGGAGTTATTCTACAGGAATCCGGTCTTTTCCGGAGTCAGACTGCCCGAAAATTCGGCCCGAGTCCGACTGGAGCAGCGCTTCCCTACAATCGCACCCACCGCCCTGGACCTGGCTCAGAGTTGTCTCCAGATGGATCCAGAAAGACGAGCTCAGTGTTCAGAACTGCTAGAACATCCTCTGTTCACACAAGACTCTTTCCACATCAGATTTTTGGACGAGCTGAATGCTAAGATCCAAAAGGACCACAGAGACAACTCTACCCTTCCCAAAATAAGCAAAACTCCAAGACGAGAAAGGAACGAACGGGACGACAAGAACCGGAGAAGCAAGGACAAGAAGCAAGCTGAAGATGTGAATGAGAAAGTCAACAAGGAAAGGGAGAGGAAGGGGGATGAGAAGAAGGAGGAAACCAAAGGAAAGCAACATTCGAAGCTCTCTAAAACTGTTCGTAACACCTCAGAACCTTTGATATCCAAACAATCCAAAACATTCGGCGCCAAGAATATCGACAATGCAGCAAAAACGACTGTGGCCGTGAAAAGTAAACCGGGAAAAGCCACCGGTGTGGATCTGAGAAAGGAACGTGAGATTCCTAAATCAACTAAAACCCGTAATTCTGATTTTTTGGAGACAACCGCGACTGCAACCCATCTGAAGGACAATAACACAGTGGTCCCTAAACCTAAACACGGGAAAGTTGCTTCCCAAGAGACAAGGGAAGACCATTTGAAAACTACAGATACAAAAGATGGAGATTCCACTGGTTTGAATTATAGTTGCTCAGACAGCATTGTGCCAAATATGACTGAGAAAAGTCTGATGGAGATCTGGAGATCGTCTAAATCGGAGCCATGTCAAGAGTTTGGGAAGAGCTGGAACAACTCAAACACAAAAGTGCCCAACTTGTCTGAAAGCTCAACCGCTGACCATCCAAATGGGACTTCATCTCCAAAAGCCTCTTTGAATTCAACCATTGATCGTACGGACACCCATTTAACACAGAAAATGGGAAAGTCTTCCACTACAGAATACCCCGAAGGCTCTTCAACAGTTGCAACTTCTAAAATAGCAAACAGTGACCAAGTAGAGACAAGCTTGACACTTAAAGCGCCTCAACGGCCAAGCAATGACCACATTAAAGTCGCTACCCCAACTACCCCTTCTGTCACCAAGCCATGCGAGACATTAGAGCATCAGGGCAATTGTTCAATGGACACAGAGCAAAAAAAGGCCTCTGAACATCCAAAAGGCTTACCCTTAAGCCCTAAGCCAGCcacaaacaacatatatttgtttaccACCCCATTAAAGACTCTTACATCAGATCTTTCAAGGCAGTCGTCCACAATTTTAATAGAAACCAGTCCTGCGATCAGCACTGGAACTCCACTTAAAGGATCCTTAAATTCAAAGTTGTCCAAAACGGGCTCGTCTTCAGATCCCAAACCCAAAAATGACACCAGATGTGTACCCAACAAGCCTTCAAGAGGCCTTCCAACAGACAGGAAACCTACAGAAGTATCGATCGCATCCAACAATCAGCATGATGCCAGTGAGCATCGTGGATGCTTGAAGATTAGCCCAGCTGCAAACCACATTGACGTATCCGATGCCTCGGGTGGAGAATACAAGGAGAATCCTGACTCTTCTGAGCTCTGCAGGATCCATCAGCAGAGCACTTCTGAATCCAAAATCACCACAGAATCCAGAATAACCTCAGCCTCCATGCCGAATGAAATCCCTAAAACCAACAAGTCAGCTGGAACCAATTTTCCGAAAACACAGAAAGCCTCCGATAAAGAGAACAGAGAAGATTTAGCactttctgtgtctgtcagtgCAACAACCAAGTCTTTGGTAAATCAAATCTCAAAGGTTACCAGAAGTTCAAGTTTTGAGCAAAAGAACAGCTCTGAATCCGATGTGAAGTCCCAGAAACCCCCTCACTTTAAAACTGTGATCATAGAACCTAAAACAACGTTTGGGTCATTTAGCAACAAGTCCACTGCAACAATGACCCTGAGGACTAAGAAAACTACATTTCCTACAGAGGCAAGAAGGAAACGAGACAACGCAGACACGGACGACACAGCAAATACATCTACTATCGCGGATTCAACTTCATTCTCCTCTACGACGACTCCAGACCGCAAAGCCTTGACAAGAAGCTTAGTCTTTCACAACATGGACGCTACAGACGCTGATGAATTTGCTTCCCAttcctctccacctcctcctccttcctccacaCCCGTCATTCCCTCTTTTTCTGTCGTCAGCCCAGCCGCCAGCGATCACCATTCCCCGGGGGCAGGTTTTCATCCTGGGACCCACAGCGTTAGGTGTGTAGACAAGCCGAGGCATCACGGTGGCATCTACAGTCGACTGTCCAATCACATTACAGGATCACTCACTGCACAGGTGTCAGAAAAGAATCTGATCTGCGAGCGCACTTTCCCGTGCGATCGCTGTAACCTTGGTACCAGCAGTGGCATCACAGCGACCAAAAAGAAGTCAGACATCCATTTCCCAGATCTAAGAAGCTCCGTGCTGCCAGAGCTCAGAGGAAGAGAagGCAAGCACAACAAAGGCACTTCCAAGGATCAGAGGAaagacaaaccggctcctccaTCTCCATCTGATACACAAAGACCGTAACAAAAGCCCCTTTCGGACTTTACTTTAATGTGACGGCAACTAAACATGTCGAAATAAGCACCCTGGTCACTTTAAAGTCACGACAATCTTACAGGCCTCTGGTTATTTGCAACCCGTTCCCCCCCCCCGAACTTGTATAATACGGTTGCTTGgccagtgtctctcagcgtcagatacgacgCAAAAATCCCTcttcagcgtctgtatggaacgcaccgggcagagcagcagctacgcGGCGCTGTAAGGTGACGTagaattaagagagacaacggtagagagtagtaggaCAGACAGAAACTCtagtagggaggttggttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198159 lncRNA upstream 1866 28429981 ~ 28453160 (+) True G146756
TU198130 lncRNA upstream 35914 28331755 ~ 28419112 (+) False G146744
TU198129 lncRNA upstream 35914 28418527 ~ 28419112 (+) False G146744
TU198132 lncRNA upstream 82913 28370378 ~ 28372113 (+) True G146744
TU198144 lncRNA upstream 101358 28350866 ~ 28353668 (+) False G146747
TU198193 lncRNA downstream 53806 28520927 ~ 28529168 (+) True G146778
TU198194 lncRNA downstream 59164 28526285 ~ 28526703 (+) True G146779
TU198201 lncRNA downstream 72224 28539345 ~ 28548694 (+) True LOC120572290
XR_005641415.1 lncRNA downstream 73986 28541107 ~ 28548109 (+) False LOC120572290
TU198204 lncRNA downstream 77119 28544240 ~ 28544949 (+) True G146783
XM_039821902.1 mRNA upstream 8366 28409545 ~ 28446660 (+) True txk
XM_039821535.1 mRNA upstream 69716 28382955 ~ 28385310 (+) True LOC120572286
XM_039821530.1 mRNA upstream 159044 28275398 ~ 28295982 (+) True LOC120572284
XM_039821538.1 mRNA downstream 145655 28612776 ~ 28613543 (+) True LOC120572291
XM_039821904.1 mRNA downstream 150744 28617865 ~ 28651546 (+) True tec
XM_039821412.1 mRNA downstream 195499 28662620 ~ 28670821 (+) True LOC120572212
XM_039821906.1 mRNA downstream 215900 28683021 ~ 28704147 (+) True LOC120572584
XM_039821907.1 mRNA downstream 239502 28706623 ~ 28711060 (+) True LOC120572585
TU198128 other upstream 35914 28331156 ~ 28419112 (+) False G146744
TU198160 other upstream 53676 28399266 ~ 28401350 (+) True G146757
TU198127 other upstream 82605 28331156 ~ 28372421 (+) False G146744
TU198139 other upstream 101358 28350866 ~ 28353668 (+) True G146747
TU198142 other upstream 101358 28350866 ~ 28353668 (+) False G146747
TU198152 other downstream 88431 28555552 ~ 28585067 (+) True G146753
TU198155 other downstream 88431 28555552 ~ 28585067 (+) False G146753
TU198209 other downstream 150803 28617924 ~ 28631108 (+) False tec
TU198224 other downstream 171629 28638750 ~ 28651513 (+) False tec
TU198223 other downstream 171959 28639080 ~ 28651513 (+) False tec

Expression Profile