LOC120572290


Basic Information

Item Value
gene id LOC120572290
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 28539345 ~ 28548694 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU198201
agagacagaggaagagggggagagggaggaagaggaagagagagagagAACGTCTCATCGTATATATGGTTCTGCGGTTCGACCCAGCTCTCGCGAGATCTGCGCGGTCCAAAGGTTTTTCCACTATGGTTTCCAGTCACAACAAACAGCGGCTAGAAAAAGCGGTTTTTAATCTGAGAAACTTGCTTTTTTCTCTGTCGTGGTGATCAGACGGTGATGATGACGACAAAGAGCTGATGTggtctgaggaggaggaggaggatgatgatgaagatgaagatgaggGTGAACAACAGCCAGCTGCTGTTTCTGTCCAGAGAAGAAACATCTGGAAACTTCCAGAAAGAAGGAACGCTGCGAGTTGGACGACAGGAgagagaTCTCCGTGAGCGGTTCTGTCGGCTGAGAGGAAACCTGCTGTTCATCCTGAAAAGACAGGTGAGACGAGAGACCGGTGAGACAGGTGAGAcgagagacaggtgagacaggtgagacgagagacaggtgagacaggtgagacgagagacaggtgagacgagagacaggtgagacaggtgagacgagagacaggtgagacaggtgagacgagagacaggtgagacaggtgagacgagagacaggtgagacgagagacaggtgagacaggtgagacgagagacaggtgagacaggtgagacgagagacaggtgagacgagagacaggtgagacaggtGAGATGAGAGGCAGgtgagacaggtgagacaggtgagacgagagacaggtgagacaggtGAGACGAGAGACAGGTGAGACGAGAGACCGGTGGACACTTTAATGGAGACACAAGAGGGATAtttatagtagtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtctgtatgtgtgtgtgtatgtgtgtgtgtgtgtgtctgtatgtgt
>XR_005641415.1
TGGCGGCCGCGTCAACGTCTCATCGTATATATGGTTCTGCGGTTCGACCCAGCTCTCGCGAGATCTGCGCGGTCCAAAGGTTTTTCCACTATGGTTTCCAGTCACAACAAACAGCGGCTAGAAAAAGCGGTTTTTAATCTGAGAAACTTGCTTTTTTCTCTGTCGTGGTGATCAGACGGTGATGATGACGACAAAGAGCTGATGTggtctgaggaggaggaggaggatgatgatgaagatgaagatgaggGTGAACAACAGCCAGCTGCTGTTTCTGTCCAGAGAAGAAACATCTGGAAACTTCCAGAAAGAAGGAACGCTGCGAGTTGGACGACAGGAgagagaTCTCCGTGAGCGGTTCTGTCGGCTGAGAGGAAACCTGCTGTTCATCCTGAAAAGACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198201 True 929 lncRNA 0.51 6 28539345 28548694
XR_005641415.1 False 404 lncRNA 0.50 3 28541107 28548109

Neighbor

gene id symbol gene type direction distance location
LOC120572276 cdkl2,LOC103363889,LOC102296890,LOC105921304 coding upstream 72224 28451993 ~ 28467121 (+)
txk txk,LOC108249159 coding upstream 92685 28409545 ~ 28446660 (+)
LOC120572286 NA coding upstream 154035 28382955 ~ 28385310 (+)
LOC120572284 LOC103373335 coding upstream 243363 28275398 ~ 28295982 (+)
LOC120572283 LOC103147980,LOC103369207,LOC106934234,LOC108243879 coding upstream 325313 28198923 ~ 28214032 (+)
LOC120572291 NA coding downstream 64082 28612776 ~ 28613543 (+)
LOC120572212 NA coding downstream 113926 28662620 ~ 28670821 (+)
LOC120572584 NA coding downstream 134327 28683021 ~ 28704147 (+)
LOC120572585 NA coding downstream 157929 28706623 ~ 28711060 (+)
LOC120573484 LOC103371991,LOC100698793,LOC102798587,LOC101487164 coding downstream 193299 28741993 ~ 28756685 (+)
G146778 NA non-coding upstream 10177 28520927 ~ 28529168 (+)
G146779 NA non-coding upstream 12642 28526285 ~ 28526703 (+)
G146756 NA non-coding upstream 86185 28429981 ~ 28453160 (+)
G146742 NA non-coding upstream 127543 28318248 ~ 28411802 (+)
LOC120572289 NA non-coding upstream 323477 28214699 ~ 28215868 (+)
G146755 NA non-coding downstream 3105 28551799 ~ 28574443 (+)
G146986 NA non-coding downstream 175516 28724210 ~ 28778995 (+)
G146989 NA non-coding downstream 210947 28759641 ~ 28763053 (+)
G146996 NA non-coding downstream 300727 28849421 ~ 28854853 (+)
G147007 NA non-coding downstream 342641 28891335 ~ 28903339 (+)
G146744 LOC103480850,LOC103151628 other upstream 120233 28331156 ~ 28419112 (+)
G146757 NA other upstream 137995 28399266 ~ 28401350 (+)
G146747 NA other upstream 185677 28350866 ~ 28353668 (+)
G146739 NA other upstream 241069 28297774 ~ 28298276 (+)
LOC120572279 LOC103147982,LOC108243879,LOC108243930,LOC108243880,LOC103369207,LOC108243890 other upstream 265487 28218812 ~ 28273858 (+)
G146753 NA other downstream 6858 28555552 ~ 28585067 (+)
tec tec other downstream 69171 28617865 ~ 28651546 (+)
G147035 NA other downstream 480788 29029482 ~ 29065509 (+)
G147192 NA other downstream 720720 29269414 ~ 29480487 (+)
LOC120572956 NA other downstream 865569 29414263 ~ 29421799 (+)

Expression


Co-expression Network