RNA id: XM_039822393.1


Basic Information

Item Value
RNA id XM_039822393.1
length 2372
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120572882
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29174343 ~ 29236780 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCCATCCGGAGTCTCAGTGACGTTCGAAGCTTCGGACGTCATCAGTCACGTGCTTATTTCAATTCGATACAAGCTCCAACACTGGGTTTCGAACCAGTGTGCTTTGCGGGAGTGATACAAGCTTCGGTGCCTCGGTGTCAAACGTCCCATCACTACCTCCAGCCACACGTTCATTCATTCGGTGGCAGTTGAGCTCACAACAACCGGTAGTTTTCTGTCTTGCTACCGGGTCAGTTCATGGTTAACTTCGAGGTCTTCGTGTTCTGCTTCACTTTTACACTCTGGACGGTCTTTGTTCCTTTTAGCACGGCACTACAGACGGACCTTAAAGTTGAAAAACTCTACTAACTGGTGCCATCTTGTGACAGAAATACACCACTGCGCCTGCTTATCCTTGTCCTCTGATCAGTCATGTGGAGAAGATGATCCTGCTCATCATCCTGCTGCTCATCATCCTGACCTCCTGTGTCTCTGGAACATTAGTAGTGAATGTGACCCAGAGCTCCTATCAGGCAGAGGAGAACCAGGAGATCACACTGGAGTGGACCTTCACAACCAACAATCACAGTTCCTCCAACTCTCTGAATATCTTCTGTGAACTGATAACTGACAGACCCTTAGGTCTGTTGAGTCTCCATGAAGGAGTTGAGGTCCCAAAGTCTCAGGATGAACAGTTTGCAGGACGAGTCCAGTGGGACAAAGACGTCCTCAGAGAAGGACGACTCAGACTTCATGTGTCCAGACTCAGGACTGAGGACTCGGGAATGTATGTCTGTAAAGTGTTCACACGTTATGGGAAGAACTCTGGTAGATGTTGGCTCAATGTCACTGagccACGCTCTGTTAAAGCCTTGACGATGGAGATGCCGCTGCATCCCAAAATCCTCCAGACTCCAGGTCCAAATGATGAGACGGATGTTCAAGGTGGGCGTCTGTACCTGAGCGTACCGATCCTCGGTGTGTTTGGCTGCATCGTCCTGATCCTGGGTGCTGGACTCAGCGCATATTTACTCAAACTAAGGCATCAACACCAAGCTGTAAGTCAGGACAACTTCTTCATTTAAGAGAGAGCACCAGCACTACCTTCACTACTACGTCTGGGACAACGTTCAGTCGGGAGATGATGACCTCCGCGGTATTTCACCGGACCTTTTAACCGACCCACGGTGGAAGAAGTCTCTCAGGGCTCTCCTCCACCAGCTGGGGGGGAACTGGGAGGGAAATACACCGTTCACACACTGGCTCTTTGTGGTTCTGTTGTTGTAACGACGCTGTGTGACCAGAGGCCCGCGCTACGGAGCAAGGTTTGGCCTCAACGAGGTGACTTCAGGGTTTGGTGGATCACGGCAGTGGATCGCTTGTGGCCGGGTCAACGGCGCCTTCACATGGGCACAGTAACCACGGCTGTAAAACGACCGAGAGTCCTTCATTTCCTTACGGAGATTCACAGACCCCATGTGAATGGGTCCGAACCGATGCAAATGGGTGCCTCGCACACCGACGCTCCAAAACCGAAATAATGACCTGACAACAGACGaagaaaacacagagactaaatacaagagGGAACGAGGTGATACAAGCACTCGGTAACCGGTGAAACCAGTCAGGGTGGGGCAGACCATCACTAAAgtgcaggaagtaaaacaagacatgacaaggGAGAAAAAtggactaccaaaataaaacaggaaacacaacaaatacacaatcaTAACCGCAGCAGCCTTTCTGTTTATAtttacatagatagatagatagatagatagatagatagatagatagataggaggTCAGAGAATTTTTAttcggagctgatttcaagtgccagtgtgaaggcggcgttaCGGAGAGTCCACGGATCTGAACTGGATTACTGCGGTTTAGTCACAATGTCAATCTTGGAagatttaaaattacatttcacacaaacacaacctcCAAAGTTAGGCCAATAACCTCTGACACTCTGACCTTCTCTTTACAATCTAAGACTTGAGATGGTAAAGGCACCATGGtgcttcatttcttttttttacctgttctctctctccactccgTAACTGACCCCAGCCTCACCTTATTTATATTATAGCCTATATTACATTGTTgggttttattatttaaaaactaTATGCACTGAAGGATCTCTGTGTGTCTTGAAGATCTAAAATCATCTTGCACATCTAAGGCGGGACTGTTTGTTATCCATTCTGTTTCGGGGATGATATGATTTACTCTCTACATTCAAGATATTTAGAGTATTCTCTAGTTTGTTGCACttggttcttttttttcaaatgttgctCTAATGTTTGGTCTCGTGGTTACAAGGAGAAGCTGctaaataaatcacatttttgaAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198696 lncRNA upstream 492 29173554 ~ 29173851 (+) True G147129
TU198581 lncRNA upstream 77743 29096270 ~ 29096600 (+) True G147042
TU198569 lncRNA upstream 108834 29047895 ~ 29065509 (+) True G147035
TU198549 lncRNA upstream 232628 28937066 ~ 28941715 (+) True G147017
TU198539 lncRNA upstream 271004 28891335 ~ 28903339 (+) True G147007
TU198680 lncRNA downstream 25064 29208411 ~ 29217804 (+) False LOC120573012
XR_005641586.1 lncRNA downstream 27415 29210762 ~ 29235418 (+) True LOC120573012
TU198788 lncRNA downstream 108103 29291450 ~ 29426726 (+) True G147198
TU198798 lncRNA downstream 169592 29352939 ~ 29362913 (+) True LOC120572959
TU198800 lncRNA downstream 169592 29352939 ~ 29358503 (+) False LOC120572959
XM_039821455.1 mRNA upstream 83393 29080213 ~ 29090950 (+) True LOC120572237
XM_039821456.1 mRNA upstream 83393 29080213 ~ 29090950 (+) False LOC120572237
XM_039821457.1 mRNA upstream 96859 29072810 ~ 29077484 (+) True LOC120572238
XM_039823295.1 mRNA upstream 243705 28927342 ~ 28930638 (+) True LOC120573516
XM_039823236.1 mRNA upstream 417658 28741993 ~ 28756685 (+) True LOC120573484
XM_039822375.1 mRNA downstream 10463 29193810 ~ 29202524 (+) True LOC120572868
XM_039822376.1 mRNA downstream 10463 29193810 ~ 29202524 (+) False LOC120572868
XM_039822380.1 mRNA downstream 70734 29254081 ~ 29260458 (+) True LOC120572873
XM_039822381.1 mRNA downstream 70734 29254081 ~ 29260458 (+) False LOC120572873
XM_039822383.1 mRNA downstream 154281 29337628 ~ 29342680 (+) True LOC120572875
TU198568 other upstream 108834 29029482 ~ 29065509 (+) False G147035
TU198572 other upstream 108834 29029482 ~ 29065509 (+) False G147035
TU198574 other upstream 108834 29029482 ~ 29065509 (+) False G147035
TU198224 other upstream 522830 28638750 ~ 28651513 (+) False tec
TU198769 other downstream 86067 29269414 ~ 29480487 (+) True G147192
TU198771 other downstream 230965 29414312 ~ 29421799 (+) True LOC120572956
TU198923 other downstream 390080 29573427 ~ 29618152 (+) True G147303
TU198920 other downstream 491966 29675313 ~ 29680473 (+) True clrn1
TU198992 other downstream 508479 29691826 ~ 29695750 (+) False LOC120572592

Expression Profile